RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 LAMA2P24043 3122 aaKnown RBP-0.09□□□□□ -2.42
HMGB1P38-201ENST00000490557 DEFB108AA8MXU0 73 aa-0.09□□□□□ -2.42
HMGB1P38-201ENST00000490557 ATMQ13315 3056 aa-0.09□□□□□ -2.42
HMGB1P38-201ENST00000490557 RYR1P21817 5038 aa-0.12□□□□□ -2.43
HMGB1P38-201ENST00000490557 PRUNE2Q8WUY3 3088 aa-0.13□□□□□ -2.43
HMGB1P38-201ENST00000490557 NIPBLQ6KC79 2804 aaeCLIP-0.14□□□□□ -2.43
HMGB1P38-201ENST00000490557 RPS29P62273 56 aaKnown RBP-0.15□□□□□ -2.43
HMGB1P38-201ENST00000490557 DNAH5Q8TE73 4624 aa-0.16□□□□□ -2.43
HMGB1P38-201ENST00000490557 CSMD2Q7Z408 3487 aa-0.16□□□□□ -2.43
HMGB1P38-201ENST00000490557 ITPR2Q14571 2701 aa-0.16□□□□□ -2.43
HMGB1P38-201ENST00000490557 CD52P31358 61 aa-0.16□□□□□ -2.44
HMGB1P38-201ENST00000490557 TRRAPQ9Y4A5 3859 aa-0.16□□□□□ -2.44
HMGB1P38-201ENST00000490557 MT4P47944 62 aa-0.18□□□□□ -2.44
HMGB1P38-201ENST00000490557 SMG1Q96Q15 3661 aaKnown RBP-0.18□□□□□ -2.44
HMGB1P38-201ENST00000490557 CEP295Q9C0D2 2601 aa-0.18□□□□□ -2.44
HMGB1P38-201ENST00000490557 FRYLO94915 3013 aa-0.19□□□□□ -2.44
HMGB1P38-201ENST00000490557 APELAP0DMC3 54 aa-0.19□□□□□ -2.44
HMGB1P38-201ENST00000490557 EYSQ5T1H1 3165 aa-0.2□□□□□ -2.44
HMGB1P38-201ENST00000490557 DNHD1Q96M86 4753 aa-0.2□□□□□ -2.44
HMGB1P38-201ENST00000490557 KRTAP20-2Q3LI61 65 aa-0.2□□□□□ -2.44
HMGB1P38-201ENST00000490557 DNAH12Q6ZR08 3092 aa-0.22□□□□□ -2.44
HMGB1P38-201ENST00000490557 MT1GP13640 62 aa-0.22□□□□□ -2.44
HMGB1P38-201ENST00000490557 SZT2Q5T011 3432 aa-0.23□□□□□ -2.45
HMGB1P38-201ENST00000490557 DMDP11532 3685 aa-0.24□□□□□ -2.45
HMGB1P38-201ENST00000490557 VPS13CQ709C8 3753 aa-0.25□□□□□ -2.45
HMGB1P38-201ENST00000490557 MKI67P46013 3256 aaKnown RBP-0.26□□□□□ -2.45
HMGB1P38-201ENST00000490557 EPPK1P58107 5090 aaKnown RBP-0.27□□□□□ -2.45
HMGB1P38-201ENST00000490557 MT1HL1P0DM35 61 aa-0.27□□□□□ -2.45
HMGB1P38-201ENST00000490557 FREM2Q5SZK8 3169 aa-0.28□□□□□ -2.45
HMGB1P38-201ENST00000490557 WDFY4Q6ZS81 3184 aa-0.28□□□□□ -2.45
HMGB1P38-201ENST00000490557 MYO15AQ9UKN7 3530 aa-0.28□□□□□ -2.45
HMGB1P38-201ENST00000490557 MT2AP02795 61 aa-0.28□□□□□ -2.45
HMGB1P38-201ENST00000490557 MUC3AQ02505 3323 aa-0.29□□□□□ -2.46
HMGB1P38-201ENST00000490557 MT1MQ8N339 61 aa-0.29□□□□□ -2.46
HMGB1P38-201ENST00000490557 HERC2O95714 4834 aa-0.29□□□□□ -2.46
HMGB1P38-201ENST00000490557 PCNTO95613 3336 aa-0.3□□□□□ -2.46
HMGB1P38-201ENST00000490557 LINC01556Q5JQF7 62 aa-0.3□□□□□ -2.46
HMGB1P38-201ENST00000490557 XIRP2A4UGR9 3374 aa-0.31□□□□□ -2.46
HMGB1P38-201ENST00000490557 A0A096LPF7 62 aa-0.32□□□□□ -2.46
HMGB1P38-201ENST00000490557 BIRC6Q9NR09 4857 aa-0.33□□□□□ -2.46
HMGB1P38-201ENST00000490557 CEP350Q5VT06 3117 aa-0.33□□□□□ -2.46
HMGB1P38-201ENST00000490557 RNF213Q63HN8 5207 aa-0.34□□□□□ -2.46
HMGB1P38-201ENST00000490557 NEBP20929 6669 aa-0.36□□□□□ -2.47
HMGB1P38-201ENST00000490557 DCHS1Q96JQ0 3298 aa-0.36□□□□□ -2.47
HMGB1P38-201ENST00000490557 MT1BP07438 61 aa-0.37□□□□□ -2.47
HMGB1P38-201ENST00000490557 BOD1L1Q8NFC6 3051 aa-0.39□□□□□ -2.47
HMGB1P38-201ENST00000490557 CENPEQ02224 2701 aa-0.39□□□□□ -2.47
HMGB1P38-201ENST00000490557 MT1FP04733 61 aa-0.42□□□□□ -2.48
HMGB1P38-201ENST00000490557 Q9Y3F1 56 aa-0.42□□□□□ -2.48
HMGB1P38-201ENST00000490557 RYR3Q15413 4870 aa-0.42□□□□□ -2.48
HMGB1P38-201ENST00000490557 HYDINQ4G0P3 5121 aa-0.42□□□□□ -2.48
HMGB1P38-201ENST00000490557 RYR2Q92736 4967 aa-0.43□□□□□ -2.48
HMGB1P38-201ENST00000490557 KIAA1109Q2LD37 5005 aa-0.43□□□□□ -2.48
HMGB1P38-201ENST00000490557 LOC400499M0QZD8 3231 aa-0.45□□□□□ -2.48
HMGB1P38-201ENST00000490557 KRTAP20-1Q3LI63 56 aa-0.46□□□□□ -2.48
HMGB1P38-201ENST00000490557 WDFY3Q8IZQ1 3526 aa-0.49□□□□□ -2.49
HMGB1P38-201ENST00000490557 DEFB108BQ8NET1 73 aa-0.5□□□□□ -2.49
HMGB1P38-201ENST00000490557 SPEGQ15772 3267 aa-0.53□□□□□ -2.49
HMGB1P38-201ENST00000490557 EP400Q96L91 3159 aa-0.54□□□□□ -2.5
HMGB1P38-201ENST00000490557 HTN3P15516 51 aa-0.54□□□□□ -2.5
HMGB1P38-201ENST00000490557 USP34Q70CQ2 3546 aa-0.55□□□□□ -2.5
HMGB1P38-201ENST00000490557 ABCA13Q86UQ4 5058 aa-0.55□□□□□ -2.5
HMGB1P38-201ENST00000490557 KRTAP19-2Q3LHN2 52 aa-0.55□□□□□ -2.5
HMGB1P38-201ENST00000490557 CFAP47Q6ZTR5 3102 aa-0.56□□□□□ -2.5
HMGB1P38-201ENST00000490557 KRTAP19-6Q3LI70 58 aa-0.57□□□□□ -2.5
HMGB1P38-201ENST00000490557 UNC80Q8N2C7 3258 aa-0.57□□□□□ -2.5
HMGB1P38-201ENST00000490557 ASPMQ8IZT6 3477 aa-0.58□□□□□ -2.5
HMGB1P38-201ENST00000490557 STATHP02808 62 aa-0.6□□□□□ -2.51
HMGB1P38-201ENST00000490557 BRCA2P51587 3418 aa-0.65□□□□□ -2.51
HMGB1P38-201ENST00000490557 COX14Q96I36 57 aa-0.65□□□□□ -2.51
HMGB1P38-201ENST00000490557 DNAH14Q0VDD8 3507 aa-0.67□□□□□ -2.52
HMGB1P38-201ENST00000490557 VCANP13611 3396 aa-0.69□□□□□ -2.52
HMGB1P38-201ENST00000490557 CENPFP49454 3210 aa-0.7□□□□□ -2.52
HMGB1P38-201ENST00000490557 CDH23Q9H251 3354 aa-0.7□□□□□ -2.52
HMGB1P38-201ENST00000490557 VPS13AQ96RL7 3174 aa-0.71□□□□□ -2.52
HMGB1P38-201ENST00000490557 UTRNP46939 3433 aa-0.76□□□□□ -2.53
HMGB1P38-201ENST00000490557 GOLGB1Q14789 3259 aaKnown RBP-0.79□□□□□ -2.54
Retrieved 77 of 20,778 RNA–protein pairs in 75.4 ms