RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 LCE1AQ5T7P2 110 aa4.22□□□□□ -1.73
TTC28-207ENST00000490475 SPRR2DP22532 72 aa4.18□□□□□ -1.74
TTC28-207ENST00000490475 KRTAP10-12P60413 245 aa4.14□□□□□ -1.75
TTC28-207ENST00000490475 KRTAP4-8A0A0G2JLE6 195 aa4.13□□□□□ -1.75
TTC28-207ENST00000490475 KRTAP4-8Q9BYQ9 185 aa4.13□□□□□ -1.75
TTC28-207ENST00000490475 KRTAP10-7P60409 375 aaPredicted RBP4.11□□□□□ -1.75
TTC28-207ENST00000490475 LOC100996750A0A140TA64 210 aa4.09□□□□□ -1.75
TTC28-207ENST00000490475 PP632Q6XCG6 107 aa4.09□□□□□ -1.75
TTC28-207ENST00000490475 KRTAP4-6Q9BYQ5 205 aa4.09□□□□□ -1.75
TTC28-207ENST00000490475 CAMK2N1Q7Z7J9 78 aa4.08□□□□□ -1.76
TTC28-207ENST00000490475 C10orf95Q9H7T3 257 aa4.08□□□□□ -1.76
TTC28-207ENST00000490475 LCE3BQ5TA77 95 aa4.07□□□□□ -1.76
TTC28-207ENST00000490475 KRTAP23-1A1A580 65 aa4.01□□□□□ -1.77
TTC28-207ENST00000490475 LCE5AQ5TCM9 118 aa3.89□□□□□ -1.79
TTC28-207ENST00000490475 KRTAP19-3Q7Z4W3 81 aa3.87□□□□□ -1.79
TTC28-207ENST00000490475 TNP1P09430 55 aa3.86□□□□□ -1.79
TTC28-207ENST00000490475 KRTAP19-7Q3SYF9 63 aa3.86□□□□□ -1.79
TTC28-207ENST00000490475 DSTQ03001 7570 aaKnown RBP3.86□□□□□ -1.79
TTC28-207ENST00000490475 MT1EP04732 61 aa3.85□□□□□ -1.79
TTC28-207ENST00000490475 MT1GP13640 62 aa3.8□□□□□ -1.8
TTC28-207ENST00000490475 KRTAP19-5Q3LI72 72 aa3.78□□□□□ -1.8
TTC28-207ENST00000490475 GPR98Q8WXG9 6306 aa3.75□□□□□ -1.81
TTC28-207ENST00000490475 KRTAP4-9Q9BYQ8 210 aa3.75□□□□□ -1.81
TTC28-207ENST00000490475 SPRR5A0A1B0GTR4 108 aa3.74□□□□□ -1.81
TTC28-207ENST00000490475 LCE3AQ5TA76 89 aa3.74□□□□□ -1.81
TTC28-207ENST00000490475 LCE4AQ5TA78 99 aa3.73□□□□□ -1.81
TTC28-207ENST00000490475 LCE1DQ5T752 114 aa3.69□□□□□ -1.82
TTC28-207ENST00000490475 INE1O15225 51 aa3.67□□□□□ -1.82
TTC28-207ENST00000490475 MT1MQ8N339 61 aa3.67□□□□□ -1.82
TTC28-207ENST00000490475 MT1LQ93083 61 aa3.66□□□□□ -1.82
TTC28-207ENST00000490475 MT4P47944 62 aa3.63□□□□□ -1.83
TTC28-207ENST00000490475 HMCN1Q96RW7 5635 aa3.61□□□□□ -1.83
TTC28-207ENST00000490475 KRTAP12-3P60328 96 aa3.59□□□□□ -1.83
TTC28-207ENST00000490475 KRTAP5-4Q6L8H1 288 aa3.59□□□□□ -1.83
TTC28-207ENST00000490475 KRTAP9-9Q9BYP9 154 aa3.56□□□□□ -1.84
TTC28-207ENST00000490475 KRTAP9-4Q9BYQ2 154 aa3.56□□□□□ -1.84
TTC28-207ENST00000490475 KRTAP4-3Q9BYR4 195 aa3.55□□□□□ -1.84
TTC28-207ENST00000490475 KRTAP4-12Q9BQ66 201 aa3.54□□□□□ -1.84
TTC28-207ENST00000490475 KRTAP4-7Q9BYR0 210 aa3.51□□□□□ -1.85
TTC28-207ENST00000490475 KRTAP5-10Q6L8G5 202 aa3.5□□□□□ -1.85
TTC28-207ENST00000490475 AHNAK2Q8IVF2 5795 aa3.48□□□□□ -1.85
TTC28-207ENST00000490475 KRTAP19-4Q3LI73 84 aa3.44□□□□□ -1.86
TTC28-207ENST00000490475 KRTAP12-4P60329 112 aa3.41□□□□□ -1.86
TTC28-207ENST00000490475 KRTAP5-7Q6L8G8 165 aa3.41□□□□□ -1.86
TTC28-207ENST00000490475 KRTAP5-3Q6L8H2 238 aa3.4□□□□□ -1.87
TTC28-207ENST00000490475 KRTAP20-2Q3LI61 65 aa3.39□□□□□ -1.87
TTC28-207ENST00000490475 KRTAP5-5Q701N2 237 aaPredicted RBP3.37□□□□□ -1.87
TTC28-207ENST00000490475 LCE3CQ5T5A8 94 aa3.34□□□□□ -1.87
TTC28-207ENST00000490475 KRTAP4-2Q9BYR5 136 aa3.23□□□□□ -1.89
TTC28-207ENST00000490475 SYNE1Q8NF91 8797 aaKnown RBP3.21□□□□□ -1.9
TTC28-207ENST00000490475 KRTAP9-6A8MVA2 160 aa3.16□□□□□ -1.9
TTC28-207ENST00000490475 MT1AP04731 61 aa3.14□□□□□ -1.91
TTC28-207ENST00000490475 KRTAP4-11Q9BYQ6 195 aa3.14□□□□□ -1.91
TTC28-207ENST00000490475 KRTAP5-2Q701N4 177 aa3.12□□□□□ -1.91
TTC28-207ENST00000490475 KRTAP6-1Q3LI64 71 aa3.08□□□□□ -1.92
TTC28-207ENST00000490475 KRTAP5-8O75690 187 aa3.01□□□□□ -1.93
TTC28-207ENST00000490475 KRTAP6-2Q3LI66 62 aa2.97□□□□□ -1.93
TTC28-207ENST00000490475 OBSCNQ5VST9 7968 aa2.96□□□□□ -1.94
TTC28-207ENST00000490475 MUC5ACP98088 5654 aa2.92□□□□□ -1.94
TTC28-207ENST00000490475 MUC5BQ9HC84 5762 aaPredicted RBP2.91□□□□□ -1.94
TTC28-207ENST00000490475 MT3P25713 68 aa2.91□□□□□ -1.94
TTC28-207ENST00000490475 AHNAKQ09666 5890 aaKnown RBP2.9□□□□□ -1.95
TTC28-207ENST00000490475 KRTAP5-1Q6L8H4 278 aa2.81□□□□□ -1.96
TTC28-207ENST00000490475 LCE1EQ5T753 118 aa2.72□□□□□ -1.97
TTC28-207ENST00000490475 LCE1CQ5T751 118 aa2.51□□□□□ -2.01
TTC28-207ENST00000490475 LCE1BQ5T7P3 118 aa2.51□□□□□ -2.01
TTC28-207ENST00000490475 LCE3EQ5T5B0 92 aa2.5□□□□□ -2.01
TTC28-207ENST00000490475 LCE3DQ9BYE3 92 aa2.5□□□□□ -2.01
TTC28-207ENST00000490475 PRM1P04553 51 aa2.29□□□□□ -2.04
TTC28-207ENST00000490475 LCE1FQ5T754 118 aa2.29□□□□□ -2.04
TTC28-207ENST00000490475 KRTAP5-11Q6L8G4 156 aa2.28□□□□□ -2.04
TTC28-207ENST00000490475 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.26□□□□□ -2.05
TTC28-207ENST00000490475 PHGR1C9JFL3 82 aa2.06□□□□□ -2.08
TTC28-207ENST00000490475 KRTAP21-2Q3LI59 83 aa2.03□□□□□ -2.08
TTC28-207ENST00000490475 KRTAP4-4Q9BYR3 166 aa1.87□□□□□ -2.11
TTC28-207ENST00000490475 MUC19Q7Z5P9 8384 aa1.81□□□□□ -2.12
TTC28-207ENST00000490475 KRTAP21-1Q3LI58 79 aa1.61□□□□□ -2.15
TTC28-207ENST00000490475 MUC16Q8WXI7 14507 aa1.29□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 12.7 ms