RNA–Protein interactions for RNA: ENST00000490101.1

SRM-206, Transcript of spermidine synthase, human

TSL 2

Gene SRM, Length 461 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRM-206	ENST00000490101	KRTAP2-1	Q9BYU5	128 aa		7.09	□□□□□ -1.27
SRM-206	ENST00000490101	KRTAP23-1	A1A580	65 aa		6.99	□□□□□ -1.29
SRM-206	ENST00000490101	LCE3A	Q5TA76	89 aa		6.95	□□□□□ -1.3
SRM-206	ENST00000490101	KTN1-AS1	Q86SY8	53 aa		6.95	□□□□□ -1.3
SRM-206	ENST00000490101	LCE3B	Q5TA77	95 aa		6.9	□□□□□ -1.3
SRM-206	ENST00000490101	PP632	Q6XCG6	107 aa		6.9	□□□□□ -1.3
SRM-206	ENST00000490101	PRAC1	Q96KF2	57 aa		6.87	□□□□□ -1.31
SRM-206	ENST00000490101	KRTAP19-5	Q3LI72	72 aa		6.74	□□□□□ -1.33
SRM-206	ENST00000490101	KRTAP19-7	Q3SYF9	63 aa		6.72	□□□□□ -1.33
SRM-206	ENST00000490101	KRTAP12-3	P60328	96 aa		6.69	□□□□□ -1.34
SRM-206	ENST00000490101	MT1E	P04732	61 aa		6.62	□□□□□ -1.35
SRM-206	ENST00000490101	DST	Q03001	7570 aa	Known RBP	6.62	□□□□□ -1.35
SRM-206	ENST00000490101	GPR98	Q8WXG9	6306 aa		6.61	□□□□□ -1.35
SRM-206	ENST00000490101	LCE5A	Q5TCM9	118 aa		6.54	□□□□□ -1.36
SRM-206	ENST00000490101	SVIP	Q8NHG7	77 aa		6.52	□□□□□ -1.37
SRM-206	ENST00000490101	KRTAP15-1	Q3LI76	137 aa		6.51	□□□□□ -1.37
SRM-206	ENST00000490101	KRTAP19-3	Q7Z4W3	81 aa		6.51	□□□□□ -1.37
SRM-206	ENST00000490101	KRTAP4-9	Q9BYQ8	210 aa		6.51	□□□□□ -1.37
SRM-206	ENST00000490101	MT1L	Q93083	61 aa		6.45	□□□□□ -1.38
SRM-206	ENST00000490101	KRTAP19-4	Q3LI73	84 aa		6.38	□□□□□ -1.39
SRM-206	ENST00000490101	MT1G	P13640	62 aa		6.35	□□□□□ -1.39
SRM-206	ENST00000490101	HMCN1	Q96RW7	5635 aa		6.31	□□□□□ -1.4
SRM-206	ENST00000490101	LCE1D	Q5T752	114 aa		6.31	□□□□□ -1.4
SRM-206	ENST00000490101	MT1M	Q8N339	61 aa		6.25	□□□□□ -1.41
SRM-206	ENST00000490101	MT4	P47944	62 aa		6.24	□□□□□ -1.41
SRM-206	ENST00000490101	LCE3C	Q5T5A8	94 aa		6.24	□□□□□ -1.41
SRM-206	ENST00000490101	LCE4A	Q5TA78	99 aa		6.21	□□□□□ -1.42
SRM-206	ENST00000490101	KRTAP4-7	Q9BYR0	210 aa		6.17	□□□□□ -1.42
SRM-206	ENST00000490101	AHNAK2	Q8IVF2	5795 aa		6.17	□□□□□ -1.42
SRM-206	ENST00000490101	KRTAP4-3	Q9BYR4	195 aa		6.13	□□□□□ -1.43
SRM-206	ENST00000490101	SPRR5	A0A1B0GTR4	108 aa		6.03	□□□□□ -1.44
SRM-206	ENST00000490101	KRTAP5-4	Q6L8H1	288 aa		6.03	□□□□□ -1.44
SRM-206	ENST00000490101	KRTAP4-6	Q9BYQ5	205 aa		6.01	□□□□□ -1.45
SRM-206	ENST00000490101	KRTAP5-10	Q6L8G5	202 aa		5.95	□□□□□ -1.46
SRM-206	ENST00000490101	KRTAP9-6	A8MVA2	160 aa		5.88	□□□□□ -1.47
SRM-206	ENST00000490101	LOC100996750	A0A140TA64	210 aa		5.8	□□□□□ -1.48
SRM-206	ENST00000490101	KRTAP5-3	Q6L8H2	238 aa		5.77	□□□□□ -1.49
SRM-206	ENST00000490101	KRTAP20-2	Q3LI61	65 aa		5.74	□□□□□ -1.49
SRM-206	ENST00000490101	KRTAP5-7	Q6L8G8	165 aa		5.74	□□□□□ -1.49
SRM-206	ENST00000490101	KRTAP5-5	Q701N2	237 aa	Predicted RBP	5.7	□□□□□ -1.5
SRM-206	ENST00000490101	LUZP6	Q538Z0	58 aa		5.66	□□□□□ -1.5
SRM-206	ENST00000490101	KRTAP12-4	P60329	112 aa		5.64	□□□□□ -1.51
SRM-206	ENST00000490101	SYNE1	Q8NF91	8797 aa	Known RBP	5.6	□□□□□ -1.51
SRM-206	ENST00000490101	MT1A	P04731	61 aa		5.5	□□□□□ -1.53
SRM-206	ENST00000490101	KRTAP6-1	Q3LI64	71 aa		5.42	□□□□□ -1.54
SRM-206	ENST00000490101	NDUFAF8	A1L188	74 aa		5.33	□□□□□ -1.56
SRM-206	ENST00000490101	KRTAP4-11	Q9BYQ6	195 aa		5.29	□□□□□ -1.56
SRM-206	ENST00000490101	KRTAP5-2	Q701N4	177 aa		5.24	□□□□□ -1.57
SRM-206	ENST00000490101	KRTAP9-4	Q9BYQ2	154 aa		5.24	□□□□□ -1.57
SRM-206	ENST00000490101	AHNAK	Q09666	5890 aa	Known RBP	5.17	□□□□□ -1.58
SRM-206	ENST00000490101	MUC5B	Q9HC84	5762 aa	Predicted RBP	5.13	□□□□□ -1.59
SRM-206	ENST00000490101	KRTAP5-8	O75690	187 aa		5.12	□□□□□ -1.59
SRM-206	ENST00000490101	MUC5AC	P98088	5654 aa		5.12	□□□□□ -1.59
SRM-206	ENST00000490101	KRTAP6-2	Q3LI66	62 aa		5.08	□□□□□ -1.6
SRM-206	ENST00000490101	OBSCN	Q5VST9	7968 aa		5.06	□□□□□ -1.6
SRM-206	ENST00000490101	MT3	P25713	68 aa		5	□□□□□ -1.61
SRM-206	ENST00000490101	KRTAP9-9	Q9BYP9	154 aa		4.91	□□□□□ -1.62
SRM-206	ENST00000490101	KRTAP5-1	Q6L8H4	278 aa		4.76	□□□□□ -1.65
SRM-206	ENST00000490101	LCE3D	Q9BYE3	92 aa		4.65	□□□□□ -1.67
SRM-206	ENST00000490101		A0A0A0MQY5	61 aa		4.64	□□□□□ -1.67
SRM-206	ENST00000490101	LCE3E	Q5T5B0	92 aa		4.5	□□□□□ -1.69
SRM-206	ENST00000490101	INE1	O15225	51 aa		4.44	□□□□□ -1.7
SRM-206	ENST00000490101	LCE1E	Q5T753	118 aa		4.44	□□□□□ -1.7
SRM-206	ENST00000490101	LCE1B	Q5T7P3	118 aa		4.29	□□□□□ -1.72
SRM-206	ENST00000490101	KRTAP4-2	Q9BYR5	136 aa		4.25	□□□□□ -1.73
SRM-206	ENST00000490101		H3BS24	57 aa		4.2	□□□□□ -1.74
SRM-206	ENST00000490101	LCE1C	Q5T751	118 aa		4.14	□□□□□ -1.75
SRM-206	ENST00000490101	KRTAP4-12	Q9BQ66	201 aa		4	□□□□□ -1.77
SRM-206	ENST00000490101	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.83	□□□□□ -1.8
SRM-206	ENST00000490101	PRM1	P04553	51 aa		3.78	□□□□□ -1.8
SRM-206	ENST00000490101	KRTAP5-11	Q6L8G4	156 aa		3.77	□□□□□ -1.81
SRM-206	ENST00000490101	LCE1F	Q5T754	118 aa		3.7	□□□□□ -1.82
SRM-206	ENST00000490101	KRTAP21-2	Q3LI59	83 aa		3.57	□□□□□ -1.84
SRM-206	ENST00000490101	PHGR1	C9JFL3	82 aa		3.51	□□□□□ -1.85
SRM-206	ENST00000490101	KRTAP4-4	Q9BYR3	166 aa		3.26	□□□□□ -1.89
SRM-206	ENST00000490101	MUC19	Q7Z5P9	8384 aa		3.15	□□□□□ -1.9
SRM-206	ENST00000490101	KRTAP21-1	Q3LI58	79 aa		2.64	□□□□□ -1.99
SRM-206	ENST00000490101	MUC16	Q8WXI7	14507 aa		2.19	□□□□□ -2.06

Retrieved 78 of 20,778 RNA–protein pairs in 7.3 ms