RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 KRTAP20-1Q3LI63 56 aa4.27□□□□□ -1.73
SKA1-204ENST00000488454 LCE1FQ5T754 118 aa4.26□□□□□ -1.73
SKA1-204ENST00000488454 A6NED7 52 aa4.24□□□□□ -1.73
SKA1-204ENST00000488454 KRTAP12-2P59991 146 aa4.24□□□□□ -1.73
SKA1-204ENST00000488454 K7ERS5 55 aa4.2□□□□□ -1.74
SKA1-204ENST00000488454 KRTAP10-12P60413 245 aa4.2□□□□□ -1.74
SKA1-204ENST00000488454 KRTAP6-3Q3LI67 103 aa4.16□□□□□ -1.74
SKA1-204ENST00000488454 PMAIP1Q13794 54 aa4.11□□□□□ -1.75
SKA1-204ENST00000488454 KMT2DO14686 5537 aa4.1□□□□□ -1.75
SKA1-204ENST00000488454 CDC42SE1Q9NRR8 79 aa4.08□□□□□ -1.76
SKA1-204ENST00000488454 MDN1Q9NU22 5596 aa4.05□□□□□ -1.76
SKA1-204ENST00000488454 C10orf95Q9H7T3 257 aa4.05□□□□□ -1.76
SKA1-204ENST00000488454 TNP1P09430 55 aa4.04□□□□□ -1.76
SKA1-204ENST00000488454 KRTAP8-1Q8IUC2 63 aa4.04□□□□□ -1.76
SKA1-204ENST00000488454 LCE3CQ5T5A8 94 aa4.01□□□□□ -1.77
SKA1-204ENST00000488454 KRTAP9-6A8MVA2 160 aa4□□□□□ -1.77
SKA1-204ENST00000488454 PRAC1Q96KF2 57 aa4□□□□□ -1.77
SKA1-204ENST00000488454 NDUFAF8A1L188 74 aa3.99□□□□□ -1.77
SKA1-204ENST00000488454 BRK1Q8WUW1 75 aa3.99□□□□□ -1.77
SKA1-204ENST00000488454 KRTAP5-9P26371 169 aa3.96□□□□□ -1.78
SKA1-204ENST00000488454 SPRR2FQ96RM1 72 aa3.95□□□□□ -1.78
SKA1-204ENST00000488454 KRTAP25-1Q3LHN0 102 aa3.94□□□□□ -1.78
SKA1-204ENST00000488454 KTN1-AS1Q86SY8 53 aa3.92□□□□□ -1.78
SKA1-204ENST00000488454 ROMO1P60602 79 aa3.91□□□□□ -1.78
SKA1-204ENST00000488454 KRTAP2-3P0C7H8 128 aa3.89□□□□□ -1.79
SKA1-204ENST00000488454 KRTAP2-4Q9BYR9 128 aa3.89□□□□□ -1.79
SKA1-204ENST00000488454 LCE3AQ5TA76 89 aa3.87□□□□□ -1.79
SKA1-204ENST00000488454 KRTAP5-1Q6L8H4 278 aa3.84□□□□□ -1.79
SKA1-204ENST00000488454 SPRR2EP22531 72 aa3.83□□□□□ -1.8
SKA1-204ENST00000488454 SPRR2BP35325 72 aa3.83□□□□□ -1.8
SKA1-204ENST00000488454 SPRR2AP35326 72 aa3.83□□□□□ -1.8
SKA1-204ENST00000488454 KRTAP19-5Q3LI72 72 aa3.83□□□□□ -1.8
SKA1-204ENST00000488454 KRTAP19-7Q3SYF9 63 aa3.82□□□□□ -1.8
SKA1-204ENST00000488454 MT1EP04732 61 aa3.78□□□□□ -1.8
SKA1-204ENST00000488454 KRTAP12-3P60328 96 aa3.75□□□□□ -1.81
SKA1-204ENST00000488454 PP632Q6XCG6 107 aa3.75□□□□□ -1.81
SKA1-204ENST00000488454 KRTAP19-3Q7Z4W3 81 aa3.71□□□□□ -1.82
SKA1-204ENST00000488454 KRTAP2-1Q9BYU5 128 aa3.71□□□□□ -1.82
SKA1-204ENST00000488454 SPRR2DP22532 72 aa3.7□□□□□ -1.82
SKA1-204ENST00000488454 AHNAK2Q8IVF2 5795 aa3.67□□□□□ -1.82
SKA1-204ENST00000488454 MT1GP13640 62 aa3.67□□□□□ -1.82
SKA1-204ENST00000488454 KRTAP4-4Q9BYR3 166 aa3.67□□□□□ -1.82
SKA1-204ENST00000488454 KRTAP5-4Q6L8H1 288 aa3.66□□□□□ -1.82
SKA1-204ENST00000488454 MT1LQ93083 61 aa3.66□□□□□ -1.82
SKA1-204ENST00000488454 LCE3EQ5T5B0 92 aa3.65□□□□□ -1.83
SKA1-204ENST00000488454 DSTQ03001 7570 aaKnown RBP3.62□□□□□ -1.83
SKA1-204ENST00000488454 MT1MQ8N339 61 aa3.58□□□□□ -1.84
SKA1-204ENST00000488454 HMCN1Q96RW7 5635 aa3.52□□□□□ -1.85
SKA1-204ENST00000488454 KRTAP4-3Q9BYR4 195 aa3.48□□□□□ -1.85
SKA1-204ENST00000488454 KRTAP5-10Q6L8G5 202 aa3.45□□□□□ -1.86
SKA1-204ENST00000488454 KRTAP5-7Q6L8G8 165 aa3.41□□□□□ -1.86
SKA1-204ENST00000488454 OBSCNQ5VST9 7968 aa3.37□□□□□ -1.87
SKA1-204ENST00000488454 SPRR5A0A1B0GTR4 108 aa3.37□□□□□ -1.87
SKA1-204ENST00000488454 AHNAKQ09666 5890 aaKnown RBP3.32□□□□□ -1.88
SKA1-204ENST00000488454 KRTAP5-5Q701N2 237 aaPredicted RBP3.23□□□□□ -1.89
SKA1-204ENST00000488454 MT4P47944 62 aa3.21□□□□□ -1.9
SKA1-204ENST00000488454 MUC5BQ9HC84 5762 aaPredicted RBP3.2□□□□□ -1.9
SKA1-204ENST00000488454 LUZP6Q538Z0 58 aa3.2□□□□□ -1.9
SKA1-204ENST00000488454 KRTAP12-4P60329 112 aa3.16□□□□□ -1.9
SKA1-204ENST00000488454 MUC5ACP98088 5654 aa3.13□□□□□ -1.91
SKA1-204ENST00000488454 MT1AP04731 61 aa3.12□□□□□ -1.91
SKA1-204ENST00000488454 KRTAP6-1Q3LI64 71 aa3.08□□□□□ -1.92
SKA1-204ENST00000488454 SYNE1Q8NF91 8797 aaKnown RBP3.06□□□□□ -1.92
SKA1-204ENST00000488454 KRTAP20-2Q3LI61 65 aa3.05□□□□□ -1.92
SKA1-204ENST00000488454 KRTAP5-2Q701N4 177 aa2.99□□□□□ -1.93
SKA1-204ENST00000488454 LCE1CQ5T751 118 aa2.95□□□□□ -1.94
SKA1-204ENST00000488454 LCE1BQ5T7P3 118 aa2.95□□□□□ -1.94
SKA1-204ENST00000488454 LCE3DQ9BYE3 92 aa2.95□□□□□ -1.94
SKA1-204ENST00000488454 KRTAP6-2Q3LI66 62 aa2.91□□□□□ -1.94
SKA1-204ENST00000488454 INE1O15225 51 aa2.73□□□□□ -1.97
SKA1-204ENST00000488454 KRTAP5-8O75690 187 aa2.65□□□□□ -1.99
SKA1-204ENST00000488454 MUC19Q7Z5P9 8384 aa2.38□□□□□ -2.03
SKA1-204ENST00000488454 KRTAP21-2Q3LI59 83 aa2.11□□□□□ -2.07
SKA1-204ENST00000488454 PHGR1C9JFL3 82 aa2.01□□□□□ -2.09
SKA1-204ENST00000488454 PRM1P04553 51 aa2□□□□□ -2.09
SKA1-204ENST00000488454 KRTAP21-1Q3LI58 79 aa1.52□□□□□ -2.17
SKA1-204ENST00000488454 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 36.1 ms