RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 A6NED7 52 aa5.58□□□□□ -1.52
LIMS3-205ENST00000487150 LCE1AQ5T7P2 110 aa5.57□□□□□ -1.52
LIMS3-205ENST00000487150 C10orf95Q9H7T3 257 aa5.55□□□□□ -1.52
LIMS3-205ENST00000487150 KRTAP20-1Q3LI63 56 aa5.52□□□□□ -1.53
LIMS3-205ENST00000487150 SPRR2DP22532 72 aa5.46□□□□□ -1.54
LIMS3-205ENST00000487150 KRTAP19-7Q3SYF9 63 aa5.45□□□□□ -1.54
LIMS3-205ENST00000487150 KRTAP2-3P0C7H8 128 aa5.44□□□□□ -1.54
LIMS3-205ENST00000487150 KRTAP25-1Q3LHN0 102 aa5.44□□□□□ -1.54
LIMS3-205ENST00000487150 KRTAP2-4Q9BYR9 128 aa5.44□□□□□ -1.54
LIMS3-205ENST00000487150 MT1EP04732 61 aa5.43□□□□□ -1.54
LIMS3-205ENST00000487150 LCE3AQ5TA76 89 aa5.4□□□□□ -1.54
LIMS3-205ENST00000487150 KRTAP19-5Q3LI72 72 aa5.39□□□□□ -1.55
LIMS3-205ENST00000487150 CDC42SE1Q9NRR8 79 aa5.37□□□□□ -1.55
LIMS3-205ENST00000487150 KRTAP19-3Q7Z4W3 81 aa5.36□□□□□ -1.55
LIMS3-205ENST00000487150 PP632Q6XCG6 107 aa5.31□□□□□ -1.56
LIMS3-205ENST00000487150 KRTAP2-2Q9BYT5 123 aa5.29□□□□□ -1.56
LIMS3-205ENST00000487150 KRTAP2-1Q9BYU5 128 aa5.29□□□□□ -1.56
LIMS3-205ENST00000487150 MT1GP13640 62 aa5.28□□□□□ -1.56
LIMS3-205ENST00000487150 KRTAP23-1A1A580 65 aa5.26□□□□□ -1.57
LIMS3-205ENST00000487150 KRTAP12-3P60328 96 aa5.25□□□□□ -1.57
LIMS3-205ENST00000487150 ROMO1P60602 79 aa5.24□□□□□ -1.57
LIMS3-205ENST00000487150 MT1LQ93083 61 aa5.22□□□□□ -1.57
LIMS3-205ENST00000487150 MT1MQ8N339 61 aa5.14□□□□□ -1.59
LIMS3-205ENST00000487150 DSTQ03001 7570 aaKnown RBP5.09□□□□□ -1.59
LIMS3-205ENST00000487150 BRK1Q8WUW1 75 aa5.05□□□□□ -1.6
LIMS3-205ENST00000487150 KRTAP15-1Q3LI76 137 aa5□□□□□ -1.61
LIMS3-205ENST00000487150 KRTAP4-3Q9BYR4 195 aa4.92□□□□□ -1.62
LIMS3-205ENST00000487150 KRTAP5-3Q6L8H2 238 aa4.88□□□□□ -1.63
LIMS3-205ENST00000487150 LCE3CQ5T5A8 94 aa4.84□□□□□ -1.63
LIMS3-205ENST00000487150 KRTAP5-4Q6L8H1 288 aa4.77□□□□□ -1.65
LIMS3-205ENST00000487150 PMAIP1Q13794 54 aa4.76□□□□□ -1.65
LIMS3-205ENST00000487150 MT4P47944 62 aa4.7□□□□□ -1.66
LIMS3-205ENST00000487150 KRTAP5-5Q701N2 237 aaPredicted RBP4.69□□□□□ -1.66
LIMS3-205ENST00000487150 HMCN1Q96RW7 5635 aa4.66□□□□□ -1.66
LIMS3-205ENST00000487150 PRO0628Q9UI54 55 aa4.63□□□□□ -1.67
LIMS3-205ENST00000487150 KRTAP12-4P60329 112 aa4.6□□□□□ -1.67
LIMS3-205ENST00000487150 GPR98Q8WXG9 6306 aa4.56□□□□□ -1.68
LIMS3-205ENST00000487150 SPRR5A0A1B0GTR4 108 aa4.55□□□□□ -1.68
LIMS3-205ENST00000487150 KRTAP20-2Q3LI61 65 aa4.49□□□□□ -1.69
LIMS3-205ENST00000487150 MT1AP04731 61 aa4.48□□□□□ -1.69
LIMS3-205ENST00000487150 KRTAP9-6A8MVA2 160 aa4.46□□□□□ -1.7
LIMS3-205ENST00000487150 SYNE1Q8NF91 8797 aaKnown RBP4.44□□□□□ -1.7
LIMS3-205ENST00000487150 PRAC1Q96KF2 57 aa4.43□□□□□ -1.7
LIMS3-205ENST00000487150 AHNAK2Q8IVF2 5795 aa4.4□□□□□ -1.7
LIMS3-205ENST00000487150 KTN1-AS1Q86SY8 53 aa4.38□□□□□ -1.71
LIMS3-205ENST00000487150 KRTAP6-1Q3LI64 71 aa4.37□□□□□ -1.71
LIMS3-205ENST00000487150 KRTAP5-10Q6L8G5 202 aa4.28□□□□□ -1.72
LIMS3-205ENST00000487150 KRTAP5-2Q701N4 177 aa4.23□□□□□ -1.73
LIMS3-205ENST00000487150 SVIPQ8NHG7 77 aa4.19□□□□□ -1.74
LIMS3-205ENST00000487150 KRTAP6-2Q3LI66 62 aa4.15□□□□□ -1.75
LIMS3-205ENST00000487150 MT3P25713 68 aa4.11□□□□□ -1.75
LIMS3-205ENST00000487150 KRTAP5-7Q6L8G8 165 aa4.11□□□□□ -1.75
LIMS3-205ENST00000487150 OBSCNQ5VST9 7968 aa3.9□□□□□ -1.78
LIMS3-205ENST00000487150 LUZP6Q538Z0 58 aa3.9□□□□□ -1.79
LIMS3-205ENST00000487150 KRTAP5-8O75690 187 aa3.87□□□□□ -1.79
LIMS3-205ENST00000487150 LCE1EQ5T753 118 aa3.78□□□□□ -1.8
LIMS3-205ENST00000487150 KRTAP5-11Q6L8G4 156 aa3.75□□□□□ -1.81
LIMS3-205ENST00000487150 A0A0A0MQY5 61 aa3.74□□□□□ -1.81
LIMS3-205ENST00000487150 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.72□□□□□ -1.81
LIMS3-205ENST00000487150 KRTAP5-1Q6L8H4 278 aa3.72□□□□□ -1.81
LIMS3-205ENST00000487150 MUC5ACP98088 5654 aa3.62□□□□□ -1.83
LIMS3-205ENST00000487150 AHNAKQ09666 5890 aaKnown RBP3.58□□□□□ -1.84
LIMS3-205ENST00000487150 MUC5BQ9HC84 5762 aaPredicted RBP3.57□□□□□ -1.84
LIMS3-205ENST00000487150 LCE3DQ9BYE3 92 aa3.56□□□□□ -1.84
LIMS3-205ENST00000487150 LCE1CQ5T751 118 aa3.45□□□□□ -1.86
LIMS3-205ENST00000487150 LCE1BQ5T7P3 118 aa3.45□□□□□ -1.86
LIMS3-205ENST00000487150 LCE3EQ5T5B0 92 aa3.39□□□□□ -1.87
LIMS3-205ENST00000487150 LCE1FQ5T754 118 aa3.38□□□□□ -1.87
LIMS3-205ENST00000487150 NDUFAF8A1L188 74 aa3.27□□□□□ -1.89
LIMS3-205ENST00000487150 KRTAP4-4Q9BYR3 166 aa3.07□□□□□ -1.92
LIMS3-205ENST00000487150 KRTAP21-2Q3LI59 83 aa2.87□□□□□ -1.95
LIMS3-205ENST00000487150 INE1O15225 51 aa2.74□□□□□ -1.97
LIMS3-205ENST00000487150 PHGR1C9JFL3 82 aa2.66□□□□□ -1.98
LIMS3-205ENST00000487150 PRM1P04553 51 aa2.65□□□□□ -1.99
LIMS3-205ENST00000487150 MUC19Q7Z5P9 8384 aa2.38□□□□□ -2.03
LIMS3-205ENST00000487150 KRTAP21-1Q3LI58 79 aa1.95□□□□□ -2.1
LIMS3-205ENST00000487150 MUC16Q8WXI7 14507 aa1.72□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 44.1 ms