RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 DSTQ03001 7570 aaKnown RBP6.71□□□□□ -1.34
PRPF40A-209ENST00000486100 MT1GP13640 62 aa6.67□□□□□ -1.34
PRPF40A-209ENST00000486100 C10orf95Q9H7T3 257 aa6.61□□□□□ -1.35
PRPF40A-209ENST00000486100 TNP1P09430 55 aa6.6□□□□□ -1.35
PRPF40A-209ENST00000486100 PP632Q6XCG6 107 aa6.6□□□□□ -1.35
PRPF40A-209ENST00000486100 BRK1Q8WUW1 75 aa6.57□□□□□ -1.36
PRPF40A-209ENST00000486100 LCE3AQ5TA76 89 aa6.55□□□□□ -1.36
PRPF40A-209ENST00000486100 MT1LQ93083 61 aa6.55□□□□□ -1.36
PRPF40A-209ENST00000486100 MT1MQ8N339 61 aa6.53□□□□□ -1.36
PRPF40A-209ENST00000486100 KRTAP4-9Q9BYQ8 210 aa6.53□□□□□ -1.36
PRPF40A-209ENST00000486100 LCE4AQ5TA78 99 aa6.38□□□□□ -1.39
PRPF40A-209ENST00000486100 LCE1DQ5T752 114 aa6.37□□□□□ -1.39
PRPF40A-209ENST00000486100 KRTAP4-3Q9BYR4 195 aa6.37□□□□□ -1.39
PRPF40A-209ENST00000486100 ROMO1P60602 79 aa6.36□□□□□ -1.39
PRPF40A-209ENST00000486100 KRTAP25-1Q3LHN0 102 aa6.35□□□□□ -1.39
PRPF40A-209ENST00000486100 GPR98Q8WXG9 6306 aa6.35□□□□□ -1.39
PRPF40A-209ENST00000486100 PRO0628Q9UI54 55 aa6.34□□□□□ -1.39
PRPF40A-209ENST00000486100 KRTAP12-3P60328 96 aa6.32□□□□□ -1.4
PRPF40A-209ENST00000486100 MT4P47944 62 aa6.29□□□□□ -1.4
PRPF40A-209ENST00000486100 HMCN1Q96RW7 5635 aa6.28□□□□□ -1.4
PRPF40A-209ENST00000486100 KRTAP5-4Q6L8H1 288 aa6.26□□□□□ -1.41
PRPF40A-209ENST00000486100 PMAIP1Q13794 54 aa6.24□□□□□ -1.41
PRPF40A-209ENST00000486100 KRTAP4-7Q9BYR0 210 aa6.22□□□□□ -1.41
PRPF40A-209ENST00000486100 KRTAP23-1A1A580 65 aa6.2□□□□□ -1.42
PRPF40A-209ENST00000486100 KRTAP4-6Q9BYQ5 205 aa6.13□□□□□ -1.43
PRPF40A-209ENST00000486100 AHNAK2Q8IVF2 5795 aa6.05□□□□□ -1.44
PRPF40A-209ENST00000486100 KRTAP19-4Q3LI73 84 aa6.01□□□□□ -1.45
PRPF40A-209ENST00000486100 KRTAP5-5Q701N2 237 aaPredicted RBP5.99□□□□□ -1.45
PRPF40A-209ENST00000486100 KRTAP5-10Q6L8G5 202 aa5.94□□□□□ -1.46
PRPF40A-209ENST00000486100 KRTAP20-2Q3LI61 65 aa5.9□□□□□ -1.46
PRPF40A-209ENST00000486100 KRTAP15-1Q3LI76 137 aa5.9□□□□□ -1.46
PRPF40A-209ENST00000486100 KTN1-AS1Q86SY8 53 aa5.9□□□□□ -1.46
PRPF40A-209ENST00000486100 LOC100996750A0A140TA64 210 aa5.89□□□□□ -1.47
PRPF40A-209ENST00000486100 SPRR5A0A1B0GTR4 108 aa5.88□□□□□ -1.47
PRPF40A-209ENST00000486100 KRTAP12-4P60329 112 aa5.86□□□□□ -1.47
PRPF40A-209ENST00000486100 LCE3CQ5T5A8 94 aa5.82□□□□□ -1.48
PRPF40A-209ENST00000486100 KRTAP5-3Q6L8H2 238 aa5.8□□□□□ -1.48
PRPF40A-209ENST00000486100 SYNE1Q8NF91 8797 aaKnown RBP5.77□□□□□ -1.49
PRPF40A-209ENST00000486100 PRAC1Q96KF2 57 aa5.76□□□□□ -1.49
PRPF40A-209ENST00000486100 KRTAP5-7Q6L8G8 165 aa5.72□□□□□ -1.49
PRPF40A-209ENST00000486100 MT1AP04731 61 aa5.57□□□□□ -1.52
PRPF40A-209ENST00000486100 KRTAP6-1Q3LI64 71 aa5.54□□□□□ -1.52
PRPF40A-209ENST00000486100 SVIPQ8NHG7 77 aa5.52□□□□□ -1.53
PRPF40A-209ENST00000486100 KRTAP9-6A8MVA2 160 aa5.48□□□□□ -1.53
PRPF40A-209ENST00000486100 KRTAP5-2Q701N4 177 aa5.47□□□□□ -1.53
PRPF40A-209ENST00000486100 KRTAP9-4Q9BYQ2 154 aa5.41□□□□□ -1.54
PRPF40A-209ENST00000486100 KRTAP4-11Q9BYQ6 195 aa5.4□□□□□ -1.54
PRPF40A-209ENST00000486100 KRTAP6-2Q3LI66 62 aa5.3□□□□□ -1.56
PRPF40A-209ENST00000486100 KRTAP5-8O75690 187 aa5.21□□□□□ -1.58
PRPF40A-209ENST00000486100 MT3P25713 68 aa5.12□□□□□ -1.59
PRPF40A-209ENST00000486100 OBSCNQ5VST9 7968 aa5.11□□□□□ -1.59
PRPF40A-209ENST00000486100 MUC5BQ9HC84 5762 aaPredicted RBP5.01□□□□□ -1.61
PRPF40A-209ENST00000486100 AHNAKQ09666 5890 aaKnown RBP4.99□□□□□ -1.61
PRPF40A-209ENST00000486100 KRTAP9-9Q9BYP9 154 aa4.96□□□□□ -1.62
PRPF40A-209ENST00000486100 MUC5ACP98088 5654 aa4.95□□□□□ -1.62
PRPF40A-209ENST00000486100 KRTAP5-1Q6L8H4 278 aa4.92□□□□□ -1.62
PRPF40A-209ENST00000486100 LUZP6Q538Z0 58 aa4.91□□□□□ -1.62
PRPF40A-209ENST00000486100 LCE1EQ5T753 118 aa4.71□□□□□ -1.66
PRPF40A-209ENST00000486100 NDUFAF8A1L188 74 aa4.45□□□□□ -1.7
PRPF40A-209ENST00000486100 KRTAP4-2Q9BYR5 136 aa4.44□□□□□ -1.7
PRPF40A-209ENST00000486100 LCE1BQ5T7P3 118 aa4.42□□□□□ -1.7
PRPF40A-209ENST00000486100 LCE1CQ5T751 118 aa4.37□□□□□ -1.71
PRPF40A-209ENST00000486100 LCE3DQ9BYE3 92 aa4.2□□□□□ -1.74
PRPF40A-209ENST00000486100 KRTAP4-12Q9BQ66 201 aa4.02□□□□□ -1.77
PRPF40A-209ENST00000486100 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.97□□□□□ -1.77
PRPF40A-209ENST00000486100 A0A0A0MQY5 61 aa3.95□□□□□ -1.78
PRPF40A-209ENST00000486100 LCE3EQ5T5B0 92 aa3.95□□□□□ -1.78
PRPF40A-209ENST00000486100 KRTAP5-11Q6L8G4 156 aa3.94□□□□□ -1.78
PRPF40A-209ENST00000486100 LCE1FQ5T754 118 aa3.86□□□□□ -1.79
PRPF40A-209ENST00000486100 INE1O15225 51 aa3.8□□□□□ -1.8
PRPF40A-209ENST00000486100 KRTAP21-2Q3LI59 83 aa3.66□□□□□ -1.82
PRPF40A-209ENST00000486100 PHGR1C9JFL3 82 aa3.45□□□□□ -1.86
PRPF40A-209ENST00000486100 H3BS24 57 aa3.34□□□□□ -1.87
PRPF40A-209ENST00000486100 KRTAP4-4Q9BYR3 166 aa3.34□□□□□ -1.87
PRPF40A-209ENST00000486100 PRM1P04553 51 aa3.23□□□□□ -1.89
PRPF40A-209ENST00000486100 MUC19Q7Z5P9 8384 aa3.15□□□□□ -1.91
PRPF40A-209ENST00000486100 KRTAP21-1Q3LI58 79 aa2.63□□□□□ -1.99
PRPF40A-209ENST00000486100 MUC16Q8WXI7 14507 aa2.24□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 93.6 ms