RNA–Protein interactions for RNA: ENST00000486037.1

SND1-213, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 3

Gene SND1, Length 695 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-213ENST00000486037 HMCN1Q96RW7 5635 aa4.16□□□□□ -1.74
SND1-213ENST00000486037 A0A0D9SG42 100 aa4.15□□□□□ -1.75
SND1-213ENST00000486037 LINC01554Q52M75 96 aa4.15□□□□□ -1.75
SND1-213ENST00000486037 CDC42SE1Q9NRR8 79 aa4.15□□□□□ -1.75
SND1-213ENST00000486037 KRTAP4-8A0A0G2JLE6 195 aa4.13□□□□□ -1.75
SND1-213ENST00000486037 BRK1Q8WUW1 75 aa4.12□□□□□ -1.75
SND1-213ENST00000486037 KRTAP12-1P59990 96 aa4.09□□□□□ -1.75
SND1-213ENST00000486037 MT1XP80297 61 aa4.09□□□□□ -1.75
SND1-213ENST00000486037 KRTAP12-2P59991 146 aa4.07□□□□□ -1.76
SND1-213ENST00000486037 SPINT4Q6UDR6 99 aa4.05□□□□□ -1.76
SND1-213ENST00000486037 LCE1DQ5T752 114 aa4.03□□□□□ -1.76
SND1-213ENST00000486037 KRTAP5-10Q6L8G5 202 aa4.02□□□□□ -1.77
SND1-213ENST00000486037 PLAC4Q8WY50 150 aa4□□□□□ -1.77
SND1-213ENST00000486037 K7ERS5 55 aa3.98□□□□□ -1.77
SND1-213ENST00000486037 PRO2289Q9P1D8 64 aa3.98□□□□□ -1.77
SND1-213ENST00000486037 NDUFAF8A1L188 74 aa3.96□□□□□ -1.78
SND1-213ENST00000486037 PMAIP1Q13794 54 aa3.95□□□□□ -1.78
SND1-213ENST00000486037 CAMK2N1Q7Z7J9 78 aa3.94□□□□□ -1.78
SND1-213ENST00000486037 KRTAP10-7P60409 375 aaPredicted RBP3.91□□□□□ -1.78
SND1-213ENST00000486037 KRTAP5-7Q6L8G8 165 aa3.91□□□□□ -1.78
SND1-213ENST00000486037 MT4P47944 62 aa3.9□□□□□ -1.79
SND1-213ENST00000486037 C10orf95Q9H7T3 257 aa3.89□□□□□ -1.79
SND1-213ENST00000486037 KTN1-AS1Q86SY8 53 aa3.86□□□□□ -1.79
SND1-213ENST00000486037 KRTAP10-12P60413 245 aa3.84□□□□□ -1.79
SND1-213ENST00000486037 ROMO1P60602 79 aa3.84□□□□□ -1.79
SND1-213ENST00000486037 SPRR5A0A1B0GTR4 108 aa3.81□□□□□ -1.8
SND1-213ENST00000486037 KRTAP4-7Q9BYR0 210 aa3.79□□□□□ -1.8
SND1-213ENST00000486037 KRTAP4-11Q9BYQ6 195 aa3.78□□□□□ -1.8
SND1-213ENST00000486037 KRTAP5-3Q6L8H2 238 aa3.77□□□□□ -1.81
SND1-213ENST00000486037 TNP1P09430 55 aa3.74□□□□□ -1.81
SND1-213ENST00000486037 KRTAP25-1Q3LHN0 102 aa3.73□□□□□ -1.81
SND1-213ENST00000486037 KRTAP19-3Q7Z4W3 81 aa3.71□□□□□ -1.82
SND1-213ENST00000486037 MT3P25713 68 aa3.67□□□□□ -1.82
SND1-213ENST00000486037 KRTAP19-7Q3SYF9 63 aa3.67□□□□□ -1.82
SND1-213ENST00000486037 KRTAP5-4Q6L8H1 288 aa3.67□□□□□ -1.82
SND1-213ENST00000486037 MT1EP04732 61 aa3.65□□□□□ -1.83
SND1-213ENST00000486037 LCE3AQ5TA76 89 aa3.64□□□□□ -1.83
SND1-213ENST00000486037 KRTAP4-2Q9BYR5 136 aa3.61□□□□□ -1.83
SND1-213ENST00000486037 AHNAKQ09666 5890 aaKnown RBP3.57□□□□□ -1.84
SND1-213ENST00000486037 PP632Q6XCG6 107 aa3.56□□□□□ -1.84
SND1-213ENST00000486037 KRTAP4-3Q9BYR4 195 aa3.53□□□□□ -1.84
SND1-213ENST00000486037 MUC5BQ9HC84 5762 aaPredicted RBP3.52□□□□□ -1.85
SND1-213ENST00000486037 MT1GP13640 62 aa3.51□□□□□ -1.85
SND1-213ENST00000486037 KRTAP20-2Q3LI61 65 aa3.51□□□□□ -1.85
SND1-213ENST00000486037 KRTAP19-5Q3LI72 72 aa3.51□□□□□ -1.85
SND1-213ENST00000486037 MT1MQ8N339 61 aa3.51□□□□□ -1.85
SND1-213ENST00000486037 MUC5ACP98088 5654 aa3.5□□□□□ -1.85
SND1-213ENST00000486037 KRTAP12-3P60328 96 aa3.47□□□□□ -1.85
SND1-213ENST00000486037 LCE1FQ5T754 118 aa3.42□□□□□ -1.86
SND1-213ENST00000486037 MT1LQ93083 61 aa3.39□□□□□ -1.87
SND1-213ENST00000486037 SYNE1Q8NF91 8797 aaKnown RBP3.32□□□□□ -1.88
SND1-213ENST00000486037 KRTAP5-8O75690 187 aa3.3□□□□□ -1.88
SND1-213ENST00000486037 KRTAP5-5Q701N2 237 aaPredicted RBP3.29□□□□□ -1.88
SND1-213ENST00000486037 KRTAP12-4P60329 112 aa3.25□□□□□ -1.89
SND1-213ENST00000486037 LCE3CQ5T5A8 94 aa3.24□□□□□ -1.89
SND1-213ENST00000486037 LUZP6Q538Z0 58 aa3.23□□□□□ -1.89
SND1-213ENST00000486037 OBSCNQ5VST9 7968 aa3.12□□□□□ -1.91
SND1-213ENST00000486037 KRTAP5-2Q701N4 177 aa3.12□□□□□ -1.91
SND1-213ENST00000486037 KRTAP9-6A8MVA2 160 aa3.09□□□□□ -1.91
SND1-213ENST00000486037 KRTAP6-1Q3LI64 71 aa2.93□□□□□ -1.94
SND1-213ENST00000486037 KRTAP5-1Q6L8H4 278 aa2.92□□□□□ -1.94
SND1-213ENST00000486037 LCE3EQ5T5B0 92 aa2.9□□□□□ -1.95
SND1-213ENST00000486037 KRTAP6-2Q3LI66 62 aa2.88□□□□□ -1.95
SND1-213ENST00000486037 MT1AP04731 61 aa2.85□□□□□ -1.95
SND1-213ENST00000486037 LCE1EQ5T753 118 aa2.81□□□□□ -1.96
SND1-213ENST00000486037 INE1O15225 51 aa2.67□□□□□ -1.98
SND1-213ENST00000486037 KRTAP5-11Q6L8G4 156 aa2.56□□□□□ -2
SND1-213ENST00000486037 LCE3DQ9BYE3 92 aa2.53□□□□□ -2
SND1-213ENST00000486037 LCE1BQ5T7P3 118 aa2.47□□□□□ -2.01
SND1-213ENST00000486037 PHGR1C9JFL3 82 aa2.35□□□□□ -2.03
SND1-213ENST00000486037 LCE1CQ5T751 118 aa2.35□□□□□ -2.03
SND1-213ENST00000486037 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.22□□□□□ -2.05
SND1-213ENST00000486037 PRM1P04553 51 aa2.02□□□□□ -2.09
SND1-213ENST00000486037 MUC19Q7Z5P9 8384 aa1.95□□□□□ -2.1
SND1-213ENST00000486037 KRTAP21-2Q3LI59 83 aa1.93□□□□□ -2.1
SND1-213ENST00000486037 KRTAP4-4Q9BYR3 166 aa1.89□□□□□ -2.11
SND1-213ENST00000486037 KRTAP21-1Q3LI58 79 aa1.75□□□□□ -2.13
SND1-213ENST00000486037 MUC16Q8WXI7 14507 aa1.38□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 14.1 ms