RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 KRTAP25-1Q3LHN0 102 aa3.18□□□□□ -1.9
SF3A1-208ENST00000485618 LCE3BQ5TA77 95 aa3.15□□□□□ -1.91
SF3A1-208ENST00000485618 AHNAK2Q8IVF2 5795 aa3.14□□□□□ -1.91
SF3A1-208ENST00000485618 HMCN1Q96RW7 5635 aa3.11□□□□□ -1.91
SF3A1-208ENST00000485618 ROMO1P60602 79 aa3.11□□□□□ -1.91
SF3A1-208ENST00000485618 KRTAP4-9Q9BYQ8 210 aa3.1□□□□□ -1.91
SF3A1-208ENST00000485618 KRTAP23-1A1A580 65 aa3.09□□□□□ -1.91
SF3A1-208ENST00000485618 LCE3AQ5TA76 89 aa3.07□□□□□ -1.92
SF3A1-208ENST00000485618 BRK1Q8WUW1 75 aa3.07□□□□□ -1.92
SF3A1-208ENST00000485618 KRTAP19-5Q3LI72 72 aa3.05□□□□□ -1.92
SF3A1-208ENST00000485618 KRTAP19-7Q3SYF9 63 aa3.05□□□□□ -1.92
SF3A1-208ENST00000485618 MT1EP04732 61 aa3.04□□□□□ -1.92
SF3A1-208ENST00000485618 PP632Q6XCG6 107 aa3.04□□□□□ -1.92
SF3A1-208ENST00000485618 KRTAP12-3P60328 96 aa3.01□□□□□ -1.93
SF3A1-208ENST00000485618 KRTAP19-3Q7Z4W3 81 aa3.01□□□□□ -1.93
SF3A1-208ENST00000485618 KRTAP5-10Q6L8G5 202 aa3□□□□□ -1.93
SF3A1-208ENST00000485618 MT1GP13640 62 aa2.99□□□□□ -1.93
SF3A1-208ENST00000485618 KRTAP19-4Q3LI73 84 aa2.98□□□□□ -1.93
SF3A1-208ENST00000485618 SPRR5A0A1B0GTR4 108 aa2.97□□□□□ -1.93
SF3A1-208ENST00000485618 LCE5AQ5TCM9 118 aa2.97□□□□□ -1.93
SF3A1-208ENST00000485618 LOC100996750A0A140TA64 210 aa2.95□□□□□ -1.94
SF3A1-208ENST00000485618 KRTAP5-7Q6L8G8 165 aa2.95□□□□□ -1.94
SF3A1-208ENST00000485618 KRTAP4-6Q9BYQ5 205 aa2.95□□□□□ -1.94
SF3A1-208ENST00000485618 LCE1DQ5T752 114 aa2.94□□□□□ -1.94
SF3A1-208ENST00000485618 PMAIP1Q13794 54 aa2.93□□□□□ -1.94
SF3A1-208ENST00000485618 MT1LQ93083 61 aa2.93□□□□□ -1.94
SF3A1-208ENST00000485618 KRTAP15-1Q3LI76 137 aa2.89□□□□□ -1.95
SF3A1-208ENST00000485618 MT1MQ8N339 61 aa2.88□□□□□ -1.95
SF3A1-208ENST00000485618 PRO0628Q9UI54 55 aa2.87□□□□□ -1.95
SF3A1-208ENST00000485618 MT4P47944 62 aa2.86□□□□□ -1.95
SF3A1-208ENST00000485618 LCE4AQ5TA78 99 aa2.82□□□□□ -1.96
SF3A1-208ENST00000485618 KRTAP5-3Q6L8H2 238 aa2.81□□□□□ -1.96
SF3A1-208ENST00000485618 KRTAP4-12Q9BQ66 201 aa2.81□□□□□ -1.96
SF3A1-208ENST00000485618 LCE3CQ5T5A8 94 aa2.79□□□□□ -1.96
SF3A1-208ENST00000485618 AHNAKQ09666 5890 aaKnown RBP2.77□□□□□ -1.97
SF3A1-208ENST00000485618 A0A0A0MQY5 61 aa2.76□□□□□ -1.97
SF3A1-208ENST00000485618 KRTAP4-7Q9BYR0 210 aa2.75□□□□□ -1.97
SF3A1-208ENST00000485618 KRTAP4-3Q9BYR4 195 aa2.74□□□□□ -1.97
SF3A1-208ENST00000485618 KRTAP5-4Q6L8H1 288 aa2.71□□□□□ -1.98
SF3A1-208ENST00000485618 KTN1-AS1Q86SY8 53 aa2.68□□□□□ -1.98
SF3A1-208ENST00000485618 MUC5BQ9HC84 5762 aaPredicted RBP2.68□□□□□ -1.98
SF3A1-208ENST00000485618 PRAC1Q96KF2 57 aa2.67□□□□□ -1.98
SF3A1-208ENST00000485618 MUC5ACP98088 5654 aa2.65□□□□□ -1.98
SF3A1-208ENST00000485618 KRTAP9-9Q9BYP9 154 aa2.65□□□□□ -1.99
SF3A1-208ENST00000485618 KRTAP9-4Q9BYQ2 154 aa2.65□□□□□ -1.99
SF3A1-208ENST00000485618 KRTAP12-4P60329 112 aa2.62□□□□□ -1.99
SF3A1-208ENST00000485618 KRTAP5-5Q701N2 237 aaPredicted RBP2.6□□□□□ -1.99
SF3A1-208ENST00000485618 KRTAP20-2Q3LI61 65 aa2.59□□□□□ -1.99
SF3A1-208ENST00000485618 MT1AP04731 61 aa2.52□□□□□ -2.01
SF3A1-208ENST00000485618 KRTAP9-6A8MVA2 160 aa2.51□□□□□ -2.01
SF3A1-208ENST00000485618 KRTAP6-1Q3LI64 71 aa2.46□□□□□ -2.02
SF3A1-208ENST00000485618 SYNE1Q8NF91 8797 aaKnown RBP2.45□□□□□ -2.02
SF3A1-208ENST00000485618 KRTAP5-8O75690 187 aa2.42□□□□□ -2.02
SF3A1-208ENST00000485618 KRTAP4-11Q9BYQ6 195 aa2.42□□□□□ -2.02
SF3A1-208ENST00000485618 LUZP6Q538Z0 58 aa2.41□□□□□ -2.02
SF3A1-208ENST00000485618 MT3P25713 68 aa2.35□□□□□ -2.03
SF3A1-208ENST00000485618 KRTAP5-2Q701N4 177 aa2.35□□□□□ -2.03
SF3A1-208ENST00000485618 KRTAP6-2Q3LI66 62 aa2.34□□□□□ -2.03
SF3A1-208ENST00000485618 KRTAP4-2Q9BYR5 136 aa2.31□□□□□ -2.04
SF3A1-208ENST00000485618 OBSCNQ5VST9 7968 aa2.3□□□□□ -2.04
SF3A1-208ENST00000485618 KRTAP5-1Q6L8H4 278 aa2.14□□□□□ -2.07
SF3A1-208ENST00000485618 LCE1EQ5T753 118 aa2.11□□□□□ -2.07
SF3A1-208ENST00000485618 NDUFAF8A1L188 74 aa2.08□□□□□ -2.08
SF3A1-208ENST00000485618 LCE3DQ9BYE3 92 aa2.08□□□□□ -2.08
SF3A1-208ENST00000485618 LCE3EQ5T5B0 92 aa1.98□□□□□ -2.09
SF3A1-208ENST00000485618 LCE1CQ5T751 118 aa1.94□□□□□ -2.1
SF3A1-208ENST00000485618 LCE1BQ5T7P3 118 aa1.94□□□□□ -2.1
SF3A1-208ENST00000485618 LCE1FQ5T754 118 aa1.93□□□□□ -2.1
SF3A1-208ENST00000485618 PHGR1C9JFL3 82 aa1.8□□□□□ -2.12
SF3A1-208ENST00000485618 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.77□□□□□ -2.13
SF3A1-208ENST00000485618 INE1O15225 51 aa1.73□□□□□ -2.13
SF3A1-208ENST00000485618 KRTAP5-11Q6L8G4 156 aa1.72□□□□□ -2.13
SF3A1-208ENST00000485618 KRTAP21-2Q3LI59 83 aa1.6□□□□□ -2.15
SF3A1-208ENST00000485618 PRM1P04553 51 aa1.56□□□□□ -2.16
SF3A1-208ENST00000485618 MUC19Q7Z5P9 8384 aa1.46□□□□□ -2.18
SF3A1-208ENST00000485618 KRTAP4-4Q9BYR3 166 aa1.43□□□□□ -2.18
SF3A1-208ENST00000485618 KRTAP21-1Q3LI58 79 aa1.35□□□□□ -2.19
SF3A1-208ENST00000485618 MUC16Q8WXI7 14507 aa1□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 124.4 ms