RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 KRTAP13-4Q3LI77 160 aa5.19□□□□□ -1.58
SQSTM1-208ENST00000485412 KRTAP19-3Q7Z4W3 81 aa5.19□□□□□ -1.58
SQSTM1-208ENST00000485412 MT1EP04732 61 aa5.18□□□□□ -1.58
SQSTM1-208ENST00000485412 HMCN1Q96RW7 5635 aa5.16□□□□□ -1.58
SQSTM1-208ENST00000485412 MT4P47944 62 aa5.14□□□□□ -1.59
SQSTM1-208ENST00000485412 AHNAK2Q8IVF2 5795 aa5.12□□□□□ -1.59
SQSTM1-208ENST00000485412 LCE4AQ5TA78 99 aa5.11□□□□□ -1.59
SQSTM1-208ENST00000485412 CAMK2N1Q7Z7J9 78 aa5.08□□□□□ -1.6
SQSTM1-208ENST00000485412 PRAC1Q96KF2 57 aa5.07□□□□□ -1.6
SQSTM1-208ENST00000485412 KRTAP5-10Q6L8G5 202 aa5.03□□□□□ -1.6
SQSTM1-208ENST00000485412 KRTAP19-5Q3LI72 72 aa5.02□□□□□ -1.61
SQSTM1-208ENST00000485412 MT1GP13640 62 aa5.01□□□□□ -1.61
SQSTM1-208ENST00000485412 PP632Q6XCG6 107 aa5.01□□□□□ -1.61
SQSTM1-208ENST00000485412 A0A0D9SG42 100 aa4.97□□□□□ -1.61
SQSTM1-208ENST00000485412 MT1MQ8N339 61 aa4.96□□□□□ -1.62
SQSTM1-208ENST00000485412 KRTAP4-3Q9BYR4 195 aa4.93□□□□□ -1.62
SQSTM1-208ENST00000485412 KRTAP5-4Q6L8H1 288 aa4.91□□□□□ -1.62
SQSTM1-208ENST00000485412 MT1LQ93083 61 aa4.91□□□□□ -1.62
SQSTM1-208ENST00000485412 KRTAP4-6Q9BYQ5 205 aa4.91□□□□□ -1.62
SQSTM1-208ENST00000485412 K7ERS5 55 aa4.9□□□□□ -1.63
SQSTM1-208ENST00000485412 KRTAP12-1P59990 96 aa4.9□□□□□ -1.63
SQSTM1-208ENST00000485412 KRTAP5-7Q6L8G8 165 aa4.9□□□□□ -1.63
SQSTM1-208ENST00000485412 SPINT4Q6UDR6 99 aa4.85□□□□□ -1.63
SQSTM1-208ENST00000485412 KRTAP5-3Q6L8H2 238 aa4.84□□□□□ -1.63
SQSTM1-208ENST00000485412 KRTAP25-1Q3LHN0 102 aa4.83□□□□□ -1.64
SQSTM1-208ENST00000485412 ROMO1P60602 79 aa4.81□□□□□ -1.64
SQSTM1-208ENST00000485412 LCE3AQ5TA76 89 aa4.78□□□□□ -1.64
SQSTM1-208ENST00000485412 C10orf95Q9H7T3 257 aa4.78□□□□□ -1.64
SQSTM1-208ENST00000485412 SPRR5A0A1B0GTR4 108 aa4.76□□□□□ -1.65
SQSTM1-208ENST00000485412 KRTAP4-7Q9BYR0 210 aa4.73□□□□□ -1.65
SQSTM1-208ENST00000485412 KRTAP20-2Q3LI61 65 aa4.68□□□□□ -1.66
SQSTM1-208ENST00000485412 TNP1P09430 55 aa4.6□□□□□ -1.67
SQSTM1-208ENST00000485412 KRTAP5-5Q701N2 237 aaPredicted RBP4.58□□□□□ -1.68
SQSTM1-208ENST00000485412 KRTAP12-4P60329 112 aa4.56□□□□□ -1.68
SQSTM1-208ENST00000485412 KRTAP12-3P60328 96 aa4.54□□□□□ -1.68
SQSTM1-208ENST00000485412 SYNE1Q8NF91 8797 aaKnown RBP4.5□□□□□ -1.69
SQSTM1-208ENST00000485412 LOC100996750A0A140TA64 210 aa4.49□□□□□ -1.69
SQSTM1-208ENST00000485412 KRTAP23-1A1A580 65 aa4.45□□□□□ -1.7
SQSTM1-208ENST00000485412 KRTAP15-1Q3LI76 137 aa4.4□□□□□ -1.71
SQSTM1-208ENST00000485412 KRTAP4-11Q9BYQ6 195 aa4.37□□□□□ -1.71
SQSTM1-208ENST00000485412 AHNAKQ09666 5890 aaKnown RBP4.32□□□□□ -1.72
SQSTM1-208ENST00000485412 MUC5ACP98088 5654 aa4.27□□□□□ -1.73
SQSTM1-208ENST00000485412 MUC5BQ9HC84 5762 aaPredicted RBP4.26□□□□□ -1.73
SQSTM1-208ENST00000485412 H3BS24 57 aa4.25□□□□□ -1.73
SQSTM1-208ENST00000485412 KRTAP5-8O75690 187 aa4.23□□□□□ -1.73
SQSTM1-208ENST00000485412 KRTAP5-2Q701N4 177 aa4.23□□□□□ -1.73
SQSTM1-208ENST00000485412 KRTAP6-1Q3LI64 71 aa4.19□□□□□ -1.74
SQSTM1-208ENST00000485412 NDUFAF8A1L188 74 aa4.18□□□□□ -1.74
SQSTM1-208ENST00000485412 KRTAP19-4Q3LI73 84 aa4.15□□□□□ -1.75
SQSTM1-208ENST00000485412 LCE3CQ5T5A8 94 aa4.15□□□□□ -1.75
SQSTM1-208ENST00000485412 MT1AP04731 61 aa4.14□□□□□ -1.75
SQSTM1-208ENST00000485412 KRTAP9-9Q9BYP9 154 aa4.12□□□□□ -1.75
SQSTM1-208ENST00000485412 OBSCNQ5VST9 7968 aa4.1□□□□□ -1.75
SQSTM1-208ENST00000485412 KRTAP6-2Q3LI66 62 aa4.04□□□□□ -1.76
SQSTM1-208ENST00000485412 KRTAP9-6A8MVA2 160 aa4.03□□□□□ -1.76
SQSTM1-208ENST00000485412 KRTAP9-4Q9BYQ2 154 aa4.03□□□□□ -1.76
SQSTM1-208ENST00000485412 LUZP6Q538Z0 58 aa3.94□□□□□ -1.78
SQSTM1-208ENST00000485412 KRTAP5-1Q6L8H4 278 aa3.86□□□□□ -1.79
SQSTM1-208ENST00000485412 MT3P25713 68 aa3.8□□□□□ -1.8
SQSTM1-208ENST00000485412 A0A0A0MQY5 61 aa3.69□□□□□ -1.82
SQSTM1-208ENST00000485412 LCE1EQ5T753 118 aa3.55□□□□□ -1.84
SQSTM1-208ENST00000485412 KRTAP4-2Q9BYR5 136 aa3.44□□□□□ -1.86
SQSTM1-208ENST00000485412 LCE1BQ5T7P3 118 aa3.43□□□□□ -1.86
SQSTM1-208ENST00000485412 INE1O15225 51 aa3.41□□□□□ -1.86
SQSTM1-208ENST00000485412 LCE1CQ5T751 118 aa3.3□□□□□ -1.88
SQSTM1-208ENST00000485412 KRTAP4-12Q9BQ66 201 aa3.26□□□□□ -1.89
SQSTM1-208ENST00000485412 KRTAP5-11Q6L8G4 156 aa3.06□□□□□ -1.92
SQSTM1-208ENST00000485412 LCE1FQ5T754 118 aa3.05□□□□□ -1.92
SQSTM1-208ENST00000485412 PHGR1C9JFL3 82 aa2.98□□□□□ -1.93
SQSTM1-208ENST00000485412 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.95□□□□□ -1.94
SQSTM1-208ENST00000485412 LCE3DQ9BYE3 92 aa2.91□□□□□ -1.94
SQSTM1-208ENST00000485412 LCE3EQ5T5B0 92 aa2.83□□□□□ -1.96
SQSTM1-208ENST00000485412 KRTAP21-2Q3LI59 83 aa2.76□□□□□ -1.97
SQSTM1-208ENST00000485412 KRTAP4-4Q9BYR3 166 aa2.62□□□□□ -1.99
SQSTM1-208ENST00000485412 MUC19Q7Z5P9 8384 aa2.57□□□□□ -2
SQSTM1-208ENST00000485412 PRM1P04553 51 aa2.56□□□□□ -2
SQSTM1-208ENST00000485412 KRTAP21-1Q3LI58 79 aa2.27□□□□□ -2.05
SQSTM1-208ENST00000485412 MUC16Q8WXI7 14507 aa1.83□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 5.8 ms