RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 LCE1AQ5T7P2 110 aa6.12□□□□□ -1.43
UPF3A-208ENST00000484246 GPR98Q8WXG9 6306 aa6.09□□□□□ -1.43
UPF3A-208ENST00000484246 KRTAP2-2Q9BYT5 123 aa6.09□□□□□ -1.43
UPF3A-208ENST00000484246 KRTAP2-1Q9BYU5 128 aa6.09□□□□□ -1.43
UPF3A-208ENST00000484246 V9GYY9 64 aa6.09□□□□□ -1.43
UPF3A-208ENST00000484246 Q1T7F1 81 aa6.05□□□□□ -1.44
UPF3A-208ENST00000484246 PCP4P48539 62 aa6□□□□□ -1.45
UPF3A-208ENST00000484246 C10orf95Q9H7T3 257 aa5.99□□□□□ -1.45
UPF3A-208ENST00000484246 MIR22HGQ0VDD5 57 aa5.98□□□□□ -1.45
UPF3A-208ENST00000484246 KRTAP19-7Q3SYF9 63 aa5.98□□□□□ -1.45
UPF3A-208ENST00000484246 SPRR2DP22532 72 aa5.96□□□□□ -1.46
UPF3A-208ENST00000484246 PSPHP1O15172 72 aa5.94□□□□□ -1.46
UPF3A-208ENST00000484246 TNP1P09430 55 aa5.94□□□□□ -1.46
UPF3A-208ENST00000484246 RPS28P62857 69 aaKnown RBP5.94□□□□□ -1.46
UPF3A-208ENST00000484246 MT1EP04732 61 aa5.92□□□□□ -1.46
UPF3A-208ENST00000484246 A0A0A0MQY5 61 aa5.91□□□□□ -1.46
UPF3A-208ENST00000484246 KRTAP19-5Q3LI72 72 aa5.84□□□□□ -1.47
UPF3A-208ENST00000484246 K7ERS5 55 aa5.83□□□□□ -1.48
UPF3A-208ENST00000484246 KRTAP19-3Q7Z4W3 81 aa5.83□□□□□ -1.48
UPF3A-208ENST00000484246 LCE3AQ5TA76 89 aa5.82□□□□□ -1.48
UPF3A-208ENST00000484246 A6NED7 52 aa5.78□□□□□ -1.48
UPF3A-208ENST00000484246 KRTAP25-1Q3LHN0 102 aa5.74□□□□□ -1.49
UPF3A-208ENST00000484246 DSTQ03001 7570 aaKnown RBP5.73□□□□□ -1.49
UPF3A-208ENST00000484246 MT1GP13640 62 aa5.71□□□□□ -1.5
UPF3A-208ENST00000484246 MT1LQ93083 61 aa5.69□□□□□ -1.5
UPF3A-208ENST00000484246 PP632Q6XCG6 107 aa5.65□□□□□ -1.5
UPF3A-208ENST00000484246 KRTAP12-3P60328 96 aa5.62□□□□□ -1.51
UPF3A-208ENST00000484246 MT1MQ8N339 61 aa5.61□□□□□ -1.51
UPF3A-208ENST00000484246 CDC42SE1Q9NRR8 79 aa5.6□□□□□ -1.51
UPF3A-208ENST00000484246 ROMO1P60602 79 aa5.48□□□□□ -1.53
UPF3A-208ENST00000484246 HMCN1Q96RW7 5635 aa5.46□□□□□ -1.54
UPF3A-208ENST00000484246 AHNAK2Q8IVF2 5795 aa5.41□□□□□ -1.54
UPF3A-208ENST00000484246 KRTAP4-3Q9BYR4 195 aa5.41□□□□□ -1.54
UPF3A-208ENST00000484246 MT3P25713 68 aa5.34□□□□□ -1.55
UPF3A-208ENST00000484246 MT4P47944 62 aa5.31□□□□□ -1.56
UPF3A-208ENST00000484246 KRTAP5-4Q6L8H1 288 aa5.27□□□□□ -1.57
UPF3A-208ENST00000484246 KRTAP5-10Q6L8G5 202 aa5.24□□□□□ -1.57
UPF3A-208ENST00000484246 LCE3CQ5T5A8 94 aa5.19□□□□□ -1.58
UPF3A-208ENST00000484246 KRTAP5-5Q701N2 237 aaPredicted RBP5.17□□□□□ -1.58
UPF3A-208ENST00000484246 BRK1Q8WUW1 75 aa5.17□□□□□ -1.58
UPF3A-208ENST00000484246 SPRR5A0A1B0GTR4 108 aa5.08□□□□□ -1.6
UPF3A-208ENST00000484246 KRTAP5-7Q6L8G8 165 aa5.07□□□□□ -1.6
UPF3A-208ENST00000484246 KRTAP5-11Q6L8G4 156 aa5.03□□□□□ -1.6
UPF3A-208ENST00000484246 LCE1EQ5T753 118 aa5.01□□□□□ -1.61
UPF3A-208ENST00000484246 LCE1FQ5T754 118 aa4.96□□□□□ -1.62
UPF3A-208ENST00000484246 KRTAP12-4P60329 112 aa4.93□□□□□ -1.62
UPF3A-208ENST00000484246 KRTAP20-2Q3LI61 65 aa4.92□□□□□ -1.62
UPF3A-208ENST00000484246 KRTAP9-6A8MVA2 160 aa4.9□□□□□ -1.63
UPF3A-208ENST00000484246 PMAIP1Q13794 54 aa4.87□□□□□ -1.63
UPF3A-208ENST00000484246 SYNE1Q8NF91 8797 aaKnown RBP4.86□□□□□ -1.63
UPF3A-208ENST00000484246 MT1AP04731 61 aa4.86□□□□□ -1.63
UPF3A-208ENST00000484246 PRAC1Q96KF2 57 aa4.85□□□□□ -1.63
UPF3A-208ENST00000484246 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.84□□□□□ -1.63
UPF3A-208ENST00000484246 KRTAP6-1Q3LI64 71 aa4.78□□□□□ -1.64
UPF3A-208ENST00000484246 PRO0628Q9UI54 55 aa4.72□□□□□ -1.65
UPF3A-208ENST00000484246 NDUFAF8A1L188 74 aa4.71□□□□□ -1.66
UPF3A-208ENST00000484246 KRTAP5-2Q701N4 177 aa4.67□□□□□ -1.66
UPF3A-208ENST00000484246 AHNAKQ09666 5890 aaKnown RBP4.61□□□□□ -1.67
UPF3A-208ENST00000484246 MUC5BQ9HC84 5762 aaPredicted RBP4.55□□□□□ -1.68
UPF3A-208ENST00000484246 MUC5ACP98088 5654 aa4.53□□□□□ -1.68
UPF3A-208ENST00000484246 KRTAP6-2Q3LI66 62 aa4.51□□□□□ -1.69
UPF3A-208ENST00000484246 KTN1-AS1Q86SY8 53 aa4.48□□□□□ -1.69
UPF3A-208ENST00000484246 KRTAP5-8O75690 187 aa4.38□□□□□ -1.71
UPF3A-208ENST00000484246 LCE3EQ5T5B0 92 aa4.24□□□□□ -1.73
UPF3A-208ENST00000484246 KRTAP5-1Q6L8H4 278 aa4.24□□□□□ -1.73
UPF3A-208ENST00000484246 OBSCNQ5VST9 7968 aa4.24□□□□□ -1.73
UPF3A-208ENST00000484246 KRTAP4-4Q9BYR3 166 aa4.04□□□□□ -1.76
UPF3A-208ENST00000484246 LUZP6Q538Z0 58 aa3.91□□□□□ -1.78
UPF3A-208ENST00000484246 LCE3DQ9BYE3 92 aa3.78□□□□□ -1.8
UPF3A-208ENST00000484246 LCE1CQ5T751 118 aa3.75□□□□□ -1.81
UPF3A-208ENST00000484246 LCE1BQ5T7P3 118 aa3.75□□□□□ -1.81
UPF3A-208ENST00000484246 KRTAP21-2Q3LI59 83 aa3.17□□□□□ -1.9
UPF3A-208ENST00000484246 PHGR1C9JFL3 82 aa3.13□□□□□ -1.91
UPF3A-208ENST00000484246 PRM1P04553 51 aa2.8□□□□□ -1.96
UPF3A-208ENST00000484246 INE1O15225 51 aa2.73□□□□□ -1.97
UPF3A-208ENST00000484246 MUC19Q7Z5P9 8384 aa2.67□□□□□ -1.98
UPF3A-208ENST00000484246 KRTAP21-1Q3LI58 79 aa2.32□□□□□ -2.04
UPF3A-208ENST00000484246 MUC16Q8WXI7 14507 aa1.87□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 226.9 ms