RNA–Protein interactions for RNA: ENST00000482519.1

VAMP4-204, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 3

Gene VAMP4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-204ENST00000482519 MT1EP04732 61 aa6.15□□□□□ -1.42
VAMP4-204ENST00000482519 TMEM258P61165 79 aa6.15□□□□□ -1.42
VAMP4-204ENST00000482519 LINC01558Q9Y6Z2 57 aa6.14□□□□□ -1.43
VAMP4-204ENST00000482519 KRTAP19-5Q3LI72 72 aa6.1□□□□□ -1.43
VAMP4-204ENST00000482519 KRTAP19-3Q7Z4W3 81 aa6.09□□□□□ -1.43
VAMP4-204ENST00000482519 C10orf95Q9H7T3 257 aa6.07□□□□□ -1.44
VAMP4-204ENST00000482519 TNP1P09430 55 aa6.04□□□□□ -1.44
VAMP4-204ENST00000482519 KRTAP23-1A1A580 65 aa6.02□□□□□ -1.45
VAMP4-204ENST00000482519 UQCR11O14957 56 aa6.01□□□□□ -1.45
VAMP4-204ENST00000482519 LCE3AQ5TA76 89 aa5.99□□□□□ -1.45
VAMP4-204ENST00000482519 DSTQ03001 7570 aaKnown RBP5.96□□□□□ -1.46
VAMP4-204ENST00000482519 MT1GP13640 62 aa5.95□□□□□ -1.46
VAMP4-204ENST00000482519 PP632Q6XCG6 107 aa5.92□□□□□ -1.46
VAMP4-204ENST00000482519 MIR22HGQ0VDD5 57 aa5.89□□□□□ -1.47
VAMP4-204ENST00000482519 MT1LQ93083 61 aa5.89□□□□□ -1.47
VAMP4-204ENST00000482519 MT1MQ8N339 61 aa5.86□□□□□ -1.47
VAMP4-204ENST00000482519 PSPHP1O15172 72 aa5.85□□□□□ -1.47
VAMP4-204ENST00000482519 V9GYY9 64 aa5.82□□□□□ -1.48
VAMP4-204ENST00000482519 K7ERS5 55 aa5.79□□□□□ -1.48
VAMP4-204ENST00000482519 Q1T7F1 81 aa5.77□□□□□ -1.49
VAMP4-204ENST00000482519 KRTAP12-3P60328 96 aa5.76□□□□□ -1.49
VAMP4-204ENST00000482519 KRTAP4-3Q9BYR4 195 aa5.76□□□□□ -1.49
VAMP4-204ENST00000482519 KRTAP5-3Q6L8H2 238 aa5.72□□□□□ -1.49
VAMP4-204ENST00000482519 KRTAP25-1Q3LHN0 102 aa5.71□□□□□ -1.5
VAMP4-204ENST00000482519 KRTAP15-1Q3LI76 137 aa5.67□□□□□ -1.5
VAMP4-204ENST00000482519 AHNAK2Q8IVF2 5795 aa5.66□□□□□ -1.5
VAMP4-204ENST00000482519 A6NED7 52 aa5.64□□□□□ -1.51
VAMP4-204ENST00000482519 MT4P47944 62 aa5.63□□□□□ -1.51
VAMP4-204ENST00000482519 HMCN1Q96RW7 5635 aa5.62□□□□□ -1.51
VAMP4-204ENST00000482519 KRTAP5-4Q6L8H1 288 aa5.51□□□□□ -1.53
VAMP4-204ENST00000482519 PCP4P48539 62 aa5.49□□□□□ -1.53
VAMP4-204ENST00000482519 RPS28P62857 69 aaKnown RBP5.49□□□□□ -1.53
VAMP4-204ENST00000482519 KRTAP5-10Q6L8G5 202 aa5.48□□□□□ -1.53
VAMP4-204ENST00000482519 CDC42SE1Q9NRR8 79 aa5.48□□□□□ -1.53
VAMP4-204ENST00000482519 ROMO1P60602 79 aa5.39□□□□□ -1.55
VAMP4-204ENST00000482519 KRTAP5-5Q701N2 237 aaPredicted RBP5.33□□□□□ -1.56
VAMP4-204ENST00000482519 KRTAP5-7Q6L8G8 165 aa5.32□□□□□ -1.56
VAMP4-204ENST00000482519 LCE3CQ5T5A8 94 aa5.31□□□□□ -1.56
VAMP4-204ENST00000482519 SPRR5A0A1B0GTR4 108 aa5.23□□□□□ -1.57
VAMP4-204ENST00000482519 KRTAP12-4P60329 112 aa5.23□□□□□ -1.57
VAMP4-204ENST00000482519 KRTAP20-2Q3LI61 65 aa5.22□□□□□ -1.57
VAMP4-204ENST00000482519 SYNE1Q8NF91 8797 aaKnown RBP5.11□□□□□ -1.59
VAMP4-204ENST00000482519 MT1AP04731 61 aa5.01□□□□□ -1.61
VAMP4-204ENST00000482519 KRTAP9-6A8MVA2 160 aa4.99□□□□□ -1.61
VAMP4-204ENST00000482519 KRTAP6-1Q3LI64 71 aa4.99□□□□□ -1.61
VAMP4-204ENST00000482519 AHNAKQ09666 5890 aaKnown RBP4.92□□□□□ -1.62
VAMP4-204ENST00000482519 BRK1Q8WUW1 75 aa4.9□□□□□ -1.63
VAMP4-204ENST00000482519 KRTAP5-2Q701N4 177 aa4.83□□□□□ -1.64
VAMP4-204ENST00000482519 MUC5ACP98088 5654 aa4.8□□□□□ -1.64
VAMP4-204ENST00000482519 KRTAP6-2Q3LI66 62 aa4.78□□□□□ -1.64
VAMP4-204ENST00000482519 MUC5BQ9HC84 5762 aaPredicted RBP4.73□□□□□ -1.65
VAMP4-204ENST00000482519 A0A0A0MQY5 61 aa4.71□□□□□ -1.66
VAMP4-204ENST00000482519 PMAIP1Q13794 54 aa4.6□□□□□ -1.67
VAMP4-204ENST00000482519 KRTAP5-8O75690 187 aa4.59□□□□□ -1.67
VAMP4-204ENST00000482519 MT3P25713 68 aa4.59□□□□□ -1.67
VAMP4-204ENST00000482519 OBSCNQ5VST9 7968 aa4.54□□□□□ -1.68
VAMP4-204ENST00000482519 PRAC1Q96KF2 57 aa4.44□□□□□ -1.7
VAMP4-204ENST00000482519 KRTAP5-11Q6L8G4 156 aa4.38□□□□□ -1.71
VAMP4-204ENST00000482519 KRTAP5-1Q6L8H4 278 aa4.33□□□□□ -1.72
VAMP4-204ENST00000482519 PRO0628Q9UI54 55 aa4.33□□□□□ -1.72
VAMP4-204ENST00000482519 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.32□□□□□ -1.72
VAMP4-204ENST00000482519 LCE1EQ5T753 118 aa4.21□□□□□ -1.74
VAMP4-204ENST00000482519 KTN1-AS1Q86SY8 53 aa4.05□□□□□ -1.76
VAMP4-204ENST00000482519 LCE1BQ5T7P3 118 aa4□□□□□ -1.77
VAMP4-204ENST00000482519 LCE1FQ5T754 118 aa3.92□□□□□ -1.78
VAMP4-204ENST00000482519 NDUFAF8A1L188 74 aa3.89□□□□□ -1.79
VAMP4-204ENST00000482519 LCE1CQ5T751 118 aa3.87□□□□□ -1.79
VAMP4-204ENST00000482519 LCE3DQ9BYE3 92 aa3.85□□□□□ -1.79
VAMP4-204ENST00000482519 LUZP6Q538Z0 58 aa3.75□□□□□ -1.81
VAMP4-204ENST00000482519 LCE3EQ5T5B0 92 aa3.62□□□□□ -1.83
VAMP4-204ENST00000482519 KRTAP4-4Q9BYR3 166 aa3.62□□□□□ -1.83
VAMP4-204ENST00000482519 KRTAP21-2Q3LI59 83 aa3.27□□□□□ -1.89
VAMP4-204ENST00000482519 PHGR1C9JFL3 82 aa3.2□□□□□ -1.9
VAMP4-204ENST00000482519 MUC19Q7Z5P9 8384 aa2.8□□□□□ -1.96
VAMP4-204ENST00000482519 PRM1P04553 51 aa2.77□□□□□ -1.97
VAMP4-204ENST00000482519 INE1O15225 51 aa2.74□□□□□ -1.97
VAMP4-204ENST00000482519 KRTAP21-1Q3LI58 79 aa2.36□□□□□ -2.03
VAMP4-204ENST00000482519 MUC16Q8WXI7 14507 aa1.96□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 153.9 ms