RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 ATP5EP56381 51 aaPredicted RBP2.73□□□□□ -1.97
USP54-213ENST00000481991 A0A0A0MQY5 61 aa2.72□□□□□ -1.97
USP54-213ENST00000481991 SERP2Q8N6R1 65 aa2.72□□□□□ -1.97
USP54-213ENST00000481991 A0A0D9SG42 100 aa2.71□□□□□ -1.98
USP54-213ENST00000481991 LINC00643Q86TS7 51 aa2.7□□□□□ -1.98
USP54-213ENST00000481991 LINC00208Q96KT6 92 aa2.7□□□□□ -1.98
USP54-213ENST00000481991 KRTAP20-2Q3LI61 65 aa2.68□□□□□ -1.98
USP54-213ENST00000481991 MT1LQ93083 61 aa2.67□□□□□ -1.98
USP54-213ENST00000481991 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.66□□□□□ -1.98
USP54-213ENST00000481991 H7BZZ5 65 aa2.64□□□□□ -1.99
USP54-213ENST00000481991 KRTAP12-4P60329 112 aa2.63□□□□□ -1.99
USP54-213ENST00000481991 Q1T7F1 81 aa2.63□□□□□ -1.99
USP54-213ENST00000481991 KRTAP5-11Q6L8G4 156 aa2.63□□□□□ -1.99
USP54-213ENST00000481991 MP68P56378 58 aa2.62□□□□□ -1.99
USP54-213ENST00000481991 PSPHP1O15172 72 aa2.61□□□□□ -1.99
USP54-213ENST00000481991 SPTSSBQ8NFR3 76 aa2.59□□□□□ -1.99
USP54-213ENST00000481991 TRAV7A0A075B6U4 112 aa2.58□□□□□ -2
USP54-213ENST00000481991 ATP5EP2Q5VTU8 51 aa2.58□□□□□ -2
USP54-213ENST00000481991 DMAC1Q96GE9 116 aa2.58□□□□□ -2
USP54-213ENST00000481991 KRTAP13-4Q3LI77 160 aa2.55□□□□□ -2
USP54-213ENST00000481991 SPINT4Q6UDR6 99 aa2.55□□□□□ -2
USP54-213ENST00000481991 C10orf95Q9H7T3 257 aa2.55□□□□□ -2
USP54-213ENST00000481991 CHKB-CPT1BH3BT56 60 aa2.54□□□□□ -2
USP54-213ENST00000481991 ACYP2P14621 99 aa2.54□□□□□ -2
USP54-213ENST00000481991 AHNAKQ09666 5890 aaKnown RBP2.53□□□□□ -2.01
USP54-213ENST00000481991 KRTAP5-8O75690 187 aa2.5□□□□□ -2.01
USP54-213ENST00000481991 LCE3AQ5TA76 89 aa2.49□□□□□ -2.01
USP54-213ENST00000481991 CDC42SE1Q9NRR8 79 aa2.49□□□□□ -2.01
USP54-213ENST00000481991 MUC5ACP98088 5654 aa2.49□□□□□ -2.01
USP54-213ENST00000481991 KRTAP5-5Q701N2 237 aaPredicted RBP2.48□□□□□ -2.01
USP54-213ENST00000481991 OCR1Q9BZK8 76 aa2.47□□□□□ -2.01
USP54-213ENST00000481991 MUC5BQ9HC84 5762 aaPredicted RBP2.46□□□□□ -2.02
USP54-213ENST00000481991 H3BPC8 53 aa2.46□□□□□ -2.02
USP54-213ENST00000481991 LCE1EQ5T753 118 aa2.44□□□□□ -2.02
USP54-213ENST00000481991 SPATA8Q6RVD6 105 aa2.43□□□□□ -2.02
USP54-213ENST00000481991 SNURFQ9Y675 71 aa2.42□□□□□ -2.02
USP54-213ENST00000481991 A8MU10 97 aa2.41□□□□□ -2.02
USP54-213ENST00000481991 TNP1P09430 55 aa2.41□□□□□ -2.02
USP54-213ENST00000481991 KRTAP12-3P60328 96 aa2.39□□□□□ -2.03
USP54-213ENST00000481991 ROMO1P60602 79 aa2.39□□□□□ -2.03
USP54-213ENST00000481991 SYNE1Q8NF91 8797 aaKnown RBP2.38□□□□□ -2.03
USP54-213ENST00000481991 A6NED7 52 aa2.37□□□□□ -2.03
USP54-213ENST00000481991 MT3P25713 68 aa2.37□□□□□ -2.03
USP54-213ENST00000481991 KRTAP12-1P59990 96 aa2.37□□□□□ -2.03
USP54-213ENST00000481991 SPANXA2-OT1Q8N9U9 137 aa2.36□□□□□ -2.03
USP54-213ENST00000481991 PRAC1Q96KF2 57 aa2.35□□□□□ -2.03
USP54-213ENST00000481991 PRR15LQ9BU68 103 aa2.35□□□□□ -2.03
USP54-213ENST00000481991 LINC01558Q9Y6Z2 57 aa2.35□□□□□ -2.03
USP54-213ENST00000481991 KRTAP5-2Q701N4 177 aa2.34□□□□□ -2.03
USP54-213ENST00000481991 A0A1B0GU33 70 aa2.32□□□□□ -2.04
USP54-213ENST00000481991 KRTAP5-1Q6L8H4 278 aa2.32□□□□□ -2.04
USP54-213ENST00000481991 OBSCNQ5VST9 7968 aa2.32□□□□□ -2.04
USP54-213ENST00000481991 K7ERS5 55 aa2.3□□□□□ -2.04
USP54-213ENST00000481991 MIR22HGQ0VDD5 57 aa2.3□□□□□ -2.04
USP54-213ENST00000481991 KRTAP6-1Q3LI64 71 aa2.29□□□□□ -2.04
USP54-213ENST00000481991 LUZP6Q538Z0 58 aa2.29□□□□□ -2.04
USP54-213ENST00000481991 KRTAP6-2Q3LI66 62 aa2.28□□□□□ -2.04
USP54-213ENST00000481991 MT1AP04731 61 aa2.25□□□□□ -2.05
USP54-213ENST00000481991 KRTAP25-1Q3LHN0 102 aa2.25□□□□□ -2.05
USP54-213ENST00000481991 KRTAP4-4Q9BYR3 166 aa2.24□□□□□ -2.05
USP54-213ENST00000481991 UQCR11O14957 56 aa2.21□□□□□ -2.06
USP54-213ENST00000481991 COA5Q86WW8 74 aa2.21□□□□□ -2.06
USP54-213ENST00000481991 NDUFAF8A1L188 74 aa2.17□□□□□ -2.06
USP54-213ENST00000481991 LCE3CQ5T5A8 94 aa2.16□□□□□ -2.06
USP54-213ENST00000481991 A0A1B0GU69 56 aa2.13□□□□□ -2.07
USP54-213ENST00000481991 KRTAP9-6A8MVA2 160 aa2.11□□□□□ -2.07
USP54-213ENST00000481991 LCE1BQ5T7P3 118 aa2.02□□□□□ -2.09
USP54-213ENST00000481991 LCE1FQ5T754 118 aa2□□□□□ -2.09
USP54-213ENST00000481991 INE1O15225 51 aa1.92□□□□□ -2.1
USP54-213ENST00000481991 LCE1CQ5T751 118 aa1.84□□□□□ -2.11
USP54-213ENST00000481991 PHGR1C9JFL3 82 aa1.83□□□□□ -2.12
USP54-213ENST00000481991 LCE3EQ5T5B0 92 aa1.75□□□□□ -2.13
USP54-213ENST00000481991 LCE3DQ9BYE3 92 aa1.5□□□□□ -2.17
USP54-213ENST00000481991 KRTAP21-2Q3LI59 83 aa1.47□□□□□ -2.17
USP54-213ENST00000481991 MUC19Q7Z5P9 8384 aa1.41□□□□□ -2.18
USP54-213ENST00000481991 KRTAP21-1Q3LI58 79 aa1.36□□□□□ -2.19
USP54-213ENST00000481991 PRM1P04553 51 aa1.03□□□□□ -2.24
USP54-213ENST00000481991 MUC16Q8WXI7 14507 aa0.98□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 36.9 ms