RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 LINC01558Q9Y6Z2 57 aa4.31□□□□□ -1.72
CCM2-213ENST00000480658 PRR15LQ9BU68 103 aa4.29□□□□□ -1.72
CCM2-213ENST00000480658 KRTAP12-1P59990 96 aa4.27□□□□□ -1.73
CCM2-213ENST00000480658 KRTAP19-7Q3SYF9 63 aa4.27□□□□□ -1.73
CCM2-213ENST00000480658 KRTAP19-3Q7Z4W3 81 aa4.27□□□□□ -1.73
CCM2-213ENST00000480658 MT1EP04732 61 aa4.26□□□□□ -1.73
CCM2-213ENST00000480658 PP632Q6XCG6 107 aa4.25□□□□□ -1.73
CCM2-213ENST00000480658 RPS28P62857 69 aaKnown RBP4.21□□□□□ -1.74
CCM2-213ENST00000480658 KRTAP5-3Q6L8H2 238 aa4.21□□□□□ -1.74
CCM2-213ENST00000480658 Q1T7F1 81 aa4.2□□□□□ -1.74
CCM2-213ENST00000480658 V9GYY9 64 aa4.2□□□□□ -1.74
CCM2-213ENST00000480658 TNP1P09430 55 aa4.19□□□□□ -1.74
CCM2-213ENST00000480658 MT1GP13640 62 aa4.19□□□□□ -1.74
CCM2-213ENST00000480658 PSPHP1O15172 72 aa4.16□□□□□ -1.74
CCM2-213ENST00000480658 KRTAP19-5Q3LI72 72 aa4.16□□□□□ -1.74
CCM2-213ENST00000480658 A8MU10 97 aa4.15□□□□□ -1.75
CCM2-213ENST00000480658 UQCR11O14957 56 aa4.13□□□□□ -1.75
CCM2-213ENST00000480658 C10orf95Q9H7T3 257 aa4.11□□□□□ -1.75
CCM2-213ENST00000480658 DSTQ03001 7570 aaKnown RBP4.1□□□□□ -1.75
CCM2-213ENST00000480658 MIR22HGQ0VDD5 57 aa4.07□□□□□ -1.76
CCM2-213ENST00000480658 MT1LQ93083 61 aa4.06□□□□□ -1.76
CCM2-213ENST00000480658 LCE3AQ5TA76 89 aa4.05□□□□□ -1.76
CCM2-213ENST00000480658 MT1MQ8N339 61 aa4.05□□□□□ -1.76
CCM2-213ENST00000480658 A6NED7 52 aa4.02□□□□□ -1.77
CCM2-213ENST00000480658 K7ERS5 55 aa4.02□□□□□ -1.77
CCM2-213ENST00000480658 KRTAP12-3P60328 96 aa3.96□□□□□ -1.78
CCM2-213ENST00000480658 KRTAP25-1Q3LHN0 102 aa3.96□□□□□ -1.78
CCM2-213ENST00000480658 PRAC1Q96KF2 57 aa3.96□□□□□ -1.78
CCM2-213ENST00000480658 CDC42SE1Q9NRR8 79 aa3.92□□□□□ -1.78
CCM2-213ENST00000480658 MT4P47944 62 aa3.91□□□□□ -1.78
CCM2-213ENST00000480658 KRTAP5-4Q6L8H1 288 aa3.91□□□□□ -1.78
CCM2-213ENST00000480658 GPR98Q8WXG9 6306 aa3.86□□□□□ -1.79
CCM2-213ENST00000480658 HMCN1Q96RW7 5635 aa3.84□□□□□ -1.79
CCM2-213ENST00000480658 KRTAP4-3Q9BYR4 195 aa3.83□□□□□ -1.8
CCM2-213ENST00000480658 BRK1Q8WUW1 75 aa3.76□□□□□ -1.81
CCM2-213ENST00000480658 SPRR5A0A1B0GTR4 108 aa3.74□□□□□ -1.81
CCM2-213ENST00000480658 KRTAP12-4P60329 112 aa3.74□□□□□ -1.81
CCM2-213ENST00000480658 KRTAP5-5Q701N2 237 aaPredicted RBP3.73□□□□□ -1.81
CCM2-213ENST00000480658 ROMO1P60602 79 aa3.72□□□□□ -1.81
CCM2-213ENST00000480658 KRTAP5-10Q6L8G5 202 aa3.71□□□□□ -1.82
CCM2-213ENST00000480658 KRTAP20-2Q3LI61 65 aa3.68□□□□□ -1.82
CCM2-213ENST00000480658 LCE3CQ5T5A8 94 aa3.63□□□□□ -1.83
CCM2-213ENST00000480658 KRTAP5-7Q6L8G8 165 aa3.61□□□□□ -1.83
CCM2-213ENST00000480658 AHNAK2Q8IVF2 5795 aa3.61□□□□□ -1.83
CCM2-213ENST00000480658 NDUFAF8A1L188 74 aa3.6□□□□□ -1.83
CCM2-213ENST00000480658 PMAIP1Q13794 54 aa3.53□□□□□ -1.84
CCM2-213ENST00000480658 PRO0628Q9UI54 55 aa3.52□□□□□ -1.85
CCM2-213ENST00000480658 MT1AP04731 61 aa3.48□□□□□ -1.85
CCM2-213ENST00000480658 SYNE1Q8NF91 8797 aaKnown RBP3.43□□□□□ -1.86
CCM2-213ENST00000480658 MT3P25713 68 aa3.43□□□□□ -1.86
CCM2-213ENST00000480658 KRTAP5-2Q701N4 177 aa3.41□□□□□ -1.86
CCM2-213ENST00000480658 KRTAP6-1Q3LI64 71 aa3.4□□□□□ -1.87
CCM2-213ENST00000480658 KTN1-AS1Q86SY8 53 aa3.32□□□□□ -1.88
CCM2-213ENST00000480658 KRTAP9-6A8MVA2 160 aa3.31□□□□□ -1.88
CCM2-213ENST00000480658 KRTAP6-2Q3LI66 62 aa3.28□□□□□ -1.88
CCM2-213ENST00000480658 KRTAP5-8O75690 187 aa3.24□□□□□ -1.89
CCM2-213ENST00000480658 LCE1FQ5T754 118 aa3.23□□□□□ -1.89
CCM2-213ENST00000480658 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.18□□□□□ -1.9
CCM2-213ENST00000480658 LCE1EQ5T753 118 aa3.11□□□□□ -1.91
CCM2-213ENST00000480658 KRTAP5-11Q6L8G4 156 aa3.1□□□□□ -1.91
CCM2-213ENST00000480658 OBSCNQ5VST9 7968 aa3.07□□□□□ -1.92
CCM2-213ENST00000480658 MUC5ACP98088 5654 aa3.07□□□□□ -1.92
CCM2-213ENST00000480658 KRTAP5-1Q6L8H4 278 aa3.04□□□□□ -1.92
CCM2-213ENST00000480658 MUC5BQ9HC84 5762 aaPredicted RBP3.02□□□□□ -1.93
CCM2-213ENST00000480658 AHNAKQ09666 5890 aaKnown RBP2.99□□□□□ -1.93
CCM2-213ENST00000480658 LCE1CQ5T751 118 aa2.77□□□□□ -1.97
CCM2-213ENST00000480658 LCE1BQ5T7P3 118 aa2.77□□□□□ -1.97
CCM2-213ENST00000480658 LUZP6Q538Z0 58 aa2.76□□□□□ -1.97
CCM2-213ENST00000480658 LCE3EQ5T5B0 92 aa2.75□□□□□ -1.97
CCM2-213ENST00000480658 LCE3DQ9BYE3 92 aa2.64□□□□□ -1.99
CCM2-213ENST00000480658 KRTAP4-4Q9BYR3 166 aa2.6□□□□□ -1.99
CCM2-213ENST00000480658 KRTAP21-2Q3LI59 83 aa2.25□□□□□ -2.05
CCM2-213ENST00000480658 PHGR1C9JFL3 82 aa2.18□□□□□ -2.06
CCM2-213ENST00000480658 INE1O15225 51 aa2.04□□□□□ -2.08
CCM2-213ENST00000480658 PRM1P04553 51 aa1.94□□□□□ -2.1
CCM2-213ENST00000480658 MUC19Q7Z5P9 8384 aa1.89□□□□□ -2.11
CCM2-213ENST00000480658 KRTAP21-1Q3LI58 79 aa1.72□□□□□ -2.13
CCM2-213ENST00000480658 MUC16Q8WXI7 14507 aa1.34□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 41.9 ms