RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 KRTAP19-3Q7Z4W3 81 aa4.57□□□□□ -1.68
MSH5-SAPCD1-205ENST00000476085 SPINT4Q6UDR6 99 aa4.56□□□□□ -1.68
MSH5-SAPCD1-205ENST00000476085 LINC01558Q9Y6Z2 57 aa4.56□□□□□ -1.68
MSH5-SAPCD1-205ENST00000476085 DSTQ03001 7570 aaKnown RBP4.53□□□□□ -1.68
MSH5-SAPCD1-205ENST00000476085 KRTAP12-1P59990 96 aa4.52□□□□□ -1.69
MSH5-SAPCD1-205ENST00000476085 UQCR11O14957 56 aa4.47□□□□□ -1.69
MSH5-SAPCD1-205ENST00000476085 A8MU10 97 aa4.46□□□□□ -1.7
MSH5-SAPCD1-205ENST00000476085 MT1GP13640 62 aa4.46□□□□□ -1.7
MSH5-SAPCD1-205ENST00000476085 V9GYY9 64 aa4.46□□□□□ -1.7
MSH5-SAPCD1-205ENST00000476085 KRTAP19-5Q3LI72 72 aa4.43□□□□□ -1.7
MSH5-SAPCD1-205ENST00000476085 Q1T7F1 81 aa4.42□□□□□ -1.7
MSH5-SAPCD1-205ENST00000476085 MT1MQ8N339 61 aa4.37□□□□□ -1.71
MSH5-SAPCD1-205ENST00000476085 PP632Q6XCG6 107 aa4.36□□□□□ -1.71
MSH5-SAPCD1-205ENST00000476085 MT1LQ93083 61 aa4.36□□□□□ -1.71
MSH5-SAPCD1-205ENST00000476085 MIR22HGQ0VDD5 57 aa4.35□□□□□ -1.71
MSH5-SAPCD1-205ENST00000476085 H3BS24 57 aa4.34□□□□□ -1.71
MSH5-SAPCD1-205ENST00000476085 PSPHP1O15172 72 aa4.32□□□□□ -1.72
MSH5-SAPCD1-205ENST00000476085 TNP1P09430 55 aa4.32□□□□□ -1.72
MSH5-SAPCD1-205ENST00000476085 KRTAP5-4Q6L8H1 288 aa4.32□□□□□ -1.72
MSH5-SAPCD1-205ENST00000476085 K7ERS5 55 aa4.31□□□□□ -1.72
MSH5-SAPCD1-205ENST00000476085 HMCN1Q96RW7 5635 aa4.3□□□□□ -1.72
MSH5-SAPCD1-205ENST00000476085 MT4P47944 62 aa4.3□□□□□ -1.72
MSH5-SAPCD1-205ENST00000476085 C10orf95Q9H7T3 257 aa4.28□□□□□ -1.72
MSH5-SAPCD1-205ENST00000476085 KRTAP4-3Q9BYR4 195 aa4.27□□□□□ -1.73
MSH5-SAPCD1-205ENST00000476085 LCE3AQ5TA76 89 aa4.23□□□□□ -1.73
MSH5-SAPCD1-205ENST00000476085 KRTAP5-10Q6L8G5 202 aa4.23□□□□□ -1.73
MSH5-SAPCD1-205ENST00000476085 A6NED7 52 aa4.22□□□□□ -1.73
MSH5-SAPCD1-205ENST00000476085 AHNAK2Q8IVF2 5795 aa4.19□□□□□ -1.74
MSH5-SAPCD1-205ENST00000476085 KRTAP25-1Q3LHN0 102 aa4.16□□□□□ -1.74
MSH5-SAPCD1-205ENST00000476085 PRO0628Q9UI54 55 aa4.16□□□□□ -1.74
MSH5-SAPCD1-205ENST00000476085 CDC42SE1Q9NRR8 79 aa4.13□□□□□ -1.75
MSH5-SAPCD1-205ENST00000476085 KRTAP5-7Q6L8G8 165 aa4.09□□□□□ -1.75
MSH5-SAPCD1-205ENST00000476085 SVIPQ8NHG7 77 aa4.09□□□□□ -1.75
MSH5-SAPCD1-205ENST00000476085 BRK1Q8WUW1 75 aa4.09□□□□□ -1.75
MSH5-SAPCD1-205ENST00000476085 KRTAP5-5Q701N2 237 aaPredicted RBP4.08□□□□□ -1.76
MSH5-SAPCD1-205ENST00000476085 KRTAP12-3P60328 96 aa4.07□□□□□ -1.76
MSH5-SAPCD1-205ENST00000476085 KRTAP20-2Q3LI61 65 aa4.05□□□□□ -1.76
MSH5-SAPCD1-205ENST00000476085 KRTAP23-1A1A580 65 aa4.04□□□□□ -1.76
MSH5-SAPCD1-205ENST00000476085 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.03□□□□□ -1.76
MSH5-SAPCD1-205ENST00000476085 SPRR5A0A1B0GTR4 108 aa4.02□□□□□ -1.77
MSH5-SAPCD1-205ENST00000476085 ROMO1P60602 79 aa3.98□□□□□ -1.77
MSH5-SAPCD1-205ENST00000476085 KRTAP12-4P60329 112 aa3.93□□□□□ -1.78
MSH5-SAPCD1-205ENST00000476085 PMAIP1Q13794 54 aa3.89□□□□□ -1.79
MSH5-SAPCD1-205ENST00000476085 SYNE1Q8NF91 8797 aaKnown RBP3.85□□□□□ -1.79
MSH5-SAPCD1-205ENST00000476085 KRTAP15-1Q3LI76 137 aa3.85□□□□□ -1.79
MSH5-SAPCD1-205ENST00000476085 KRTAP5-11Q6L8G4 156 aa3.84□□□□□ -1.79
MSH5-SAPCD1-205ENST00000476085 KTN1-AS1Q86SY8 53 aa3.83□□□□□ -1.8
MSH5-SAPCD1-205ENST00000476085 KRTAP5-2Q701N4 177 aa3.76□□□□□ -1.81
MSH5-SAPCD1-205ENST00000476085 LCE3CQ5T5A8 94 aa3.75□□□□□ -1.81
MSH5-SAPCD1-205ENST00000476085 MT1AP04731 61 aa3.69□□□□□ -1.82
MSH5-SAPCD1-205ENST00000476085 KRTAP6-1Q3LI64 71 aa3.69□□□□□ -1.82
MSH5-SAPCD1-205ENST00000476085 KRTAP5-8O75690 187 aa3.64□□□□□ -1.83
MSH5-SAPCD1-205ENST00000476085 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.83
MSH5-SAPCD1-205ENST00000476085 MUC5BQ9HC84 5762 aaPredicted RBP3.58□□□□□ -1.84
MSH5-SAPCD1-205ENST00000476085 PRAC1Q96KF2 57 aa3.57□□□□□ -1.84
MSH5-SAPCD1-205ENST00000476085 MUC5ACP98088 5654 aa3.55□□□□□ -1.84
MSH5-SAPCD1-205ENST00000476085 KRTAP6-2Q3LI66 62 aa3.54□□□□□ -1.84
MSH5-SAPCD1-205ENST00000476085 AHNAKQ09666 5890 aaKnown RBP3.51□□□□□ -1.85
MSH5-SAPCD1-205ENST00000476085 LCE1EQ5T753 118 aa3.45□□□□□ -1.86
MSH5-SAPCD1-205ENST00000476085 KRTAP5-1Q6L8H4 278 aa3.45□□□□□ -1.86
MSH5-SAPCD1-205ENST00000476085 OBSCNQ5VST9 7968 aa3.4□□□□□ -1.87
MSH5-SAPCD1-205ENST00000476085 MT3P25713 68 aa3.37□□□□□ -1.87
MSH5-SAPCD1-205ENST00000476085 KRTAP4-4Q9BYR3 166 aa3.35□□□□□ -1.87
MSH5-SAPCD1-205ENST00000476085 LUZP6Q538Z0 58 aa2.96□□□□□ -1.94
MSH5-SAPCD1-205ENST00000476085 LCE1CQ5T751 118 aa2.96□□□□□ -1.94
MSH5-SAPCD1-205ENST00000476085 LCE1BQ5T7P3 118 aa2.96□□□□□ -1.94
MSH5-SAPCD1-205ENST00000476085 NDUFAF8A1L188 74 aa2.9□□□□□ -1.95
MSH5-SAPCD1-205ENST00000476085 LCE3DQ9BYE3 92 aa2.75□□□□□ -1.97
MSH5-SAPCD1-205ENST00000476085 LCE1FQ5T754 118 aa2.66□□□□□ -1.98
MSH5-SAPCD1-205ENST00000476085 A0A0A0MQY5 61 aa2.64□□□□□ -1.99
MSH5-SAPCD1-205ENST00000476085 LCE3EQ5T5B0 92 aa2.61□□□□□ -1.99
MSH5-SAPCD1-205ENST00000476085 INE1O15225 51 aa2.54□□□□□ -2
MSH5-SAPCD1-205ENST00000476085 KRTAP21-2Q3LI59 83 aa2.47□□□□□ -2.01
MSH5-SAPCD1-205ENST00000476085 PHGR1C9JFL3 82 aa2.41□□□□□ -2.02
MSH5-SAPCD1-205ENST00000476085 MUC19Q7Z5P9 8384 aa2.11□□□□□ -2.07
MSH5-SAPCD1-205ENST00000476085 PRM1P04553 51 aa2.02□□□□□ -2.09
MSH5-SAPCD1-205ENST00000476085 KRTAP21-1Q3LI58 79 aa1.86□□□□□ -2.11
MSH5-SAPCD1-205ENST00000476085 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 14.8 ms