RNA–Protein interactions for RNA: ENST00000475482.5

CPSF3-203, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 4

Gene CPSF3, Length 871 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-203ENST00000475482 SPRR2AP35326 72 aa6.24□□□□□ -1.41
CPSF3-203ENST00000475482 KRTAP2-3P0C7H8 128 aa6.23□□□□□ -1.41
CPSF3-203ENST00000475482 KRTAP10-7P60409 375 aaPredicted RBP6.23□□□□□ -1.41
CPSF3-203ENST00000475482 KRTAP2-4Q9BYR9 128 aa6.23□□□□□ -1.41
CPSF3-203ENST00000475482 KRTAP10-12P60413 245 aa6.22□□□□□ -1.41
CPSF3-203ENST00000475482 LCE1AQ5T7P2 110 aa6.22□□□□□ -1.41
CPSF3-203ENST00000475482 LCE1DQ5T752 114 aa6.18□□□□□ -1.42
CPSF3-203ENST00000475482 H3BS24 57 aa6.17□□□□□ -1.42
CPSF3-203ENST00000475482 KRTAP23-1A1A580 65 aa6.09□□□□□ -1.43
CPSF3-203ENST00000475482 PP632Q6XCG6 107 aa6.09□□□□□ -1.43
CPSF3-203ENST00000475482 PRAC1Q96KF2 57 aa6.08□□□□□ -1.44
CPSF3-203ENST00000475482 KRTAP4-7Q9BYR0 210 aa6.07□□□□□ -1.44
CPSF3-203ENST00000475482 SPRR2DP22532 72 aa6.04□□□□□ -1.44
CPSF3-203ENST00000475482 KRTAP2-2Q9BYT5 123 aa6.04□□□□□ -1.44
CPSF3-203ENST00000475482 KRTAP2-1Q9BYU5 128 aa6.04□□□□□ -1.44
CPSF3-203ENST00000475482 SVIPQ8NHG7 77 aa5.95□□□□□ -1.46
CPSF3-203ENST00000475482 KRTAP4-9Q9BYQ8 210 aa5.94□□□□□ -1.46
CPSF3-203ENST00000475482 LCE3AQ5TA76 89 aa5.93□□□□□ -1.46
CPSF3-203ENST00000475482 KRTAP19-7Q3SYF9 63 aa5.86□□□□□ -1.47
CPSF3-203ENST00000475482 LCE4AQ5TA78 99 aa5.84□□□□□ -1.47
CPSF3-203ENST00000475482 LCE5AQ5TCM9 118 aa5.8□□□□□ -1.48
CPSF3-203ENST00000475482 MT1EP04732 61 aa5.79□□□□□ -1.48
CPSF3-203ENST00000475482 KRTAP19-3Q7Z4W3 81 aa5.75□□□□□ -1.49
CPSF3-203ENST00000475482 KRTAP12-3P60328 96 aa5.74□□□□□ -1.49
CPSF3-203ENST00000475482 KRTAP4-11Q9BYQ6 195 aa5.74□□□□□ -1.49
CPSF3-203ENST00000475482 KRTAP4-2Q9BYR5 136 aa5.74□□□□□ -1.49
CPSF3-203ENST00000475482 KRTAP19-5Q3LI72 72 aa5.7□□□□□ -1.5
CPSF3-203ENST00000475482 DSTQ03001 7570 aaKnown RBP5.7□□□□□ -1.5
CPSF3-203ENST00000475482 MT1GP13640 62 aa5.62□□□□□ -1.51
CPSF3-203ENST00000475482 KRTAP15-1Q3LI76 137 aa5.62□□□□□ -1.51
CPSF3-203ENST00000475482 MT1LQ93083 61 aa5.53□□□□□ -1.52
CPSF3-203ENST00000475482 MT1MQ8N339 61 aa5.51□□□□□ -1.53
CPSF3-203ENST00000475482 GPR98Q8WXG9 6306 aa5.37□□□□□ -1.55
CPSF3-203ENST00000475482 LCE3CQ5T5A8 94 aa5.36□□□□□ -1.55
CPSF3-203ENST00000475482 KRTAP4-3Q9BYR4 195 aa5.36□□□□□ -1.55
CPSF3-203ENST00000475482 KRTAP5-4Q6L8H1 288 aa5.32□□□□□ -1.56
CPSF3-203ENST00000475482 HMCN1Q96RW7 5635 aa5.28□□□□□ -1.56
CPSF3-203ENST00000475482 MT4P47944 62 aa5.27□□□□□ -1.57
CPSF3-203ENST00000475482 SPRR5A0A1B0GTR4 108 aa5.25□□□□□ -1.57
CPSF3-203ENST00000475482 LUZP6Q538Z0 58 aa5.16□□□□□ -1.58
CPSF3-203ENST00000475482 KRTAP5-5Q701N2 237 aaPredicted RBP5.1□□□□□ -1.59
CPSF3-203ENST00000475482 AHNAK2Q8IVF2 5795 aa5.09□□□□□ -1.59
CPSF3-203ENST00000475482 KRTAP5-10Q6L8G5 202 aa5.04□□□□□ -1.6
CPSF3-203ENST00000475482 KRTAP5-3Q6L8H2 238 aa5.03□□□□□ -1.6
CPSF3-203ENST00000475482 KRTAP20-2Q3LI61 65 aa4.99□□□□□ -1.61
CPSF3-203ENST00000475482 KRTAP9-6A8MVA2 160 aa4.95□□□□□ -1.62
CPSF3-203ENST00000475482 SYNE1Q8NF91 8797 aaKnown RBP4.92□□□□□ -1.62
CPSF3-203ENST00000475482 KRTAP12-4P60329 112 aa4.9□□□□□ -1.63
CPSF3-203ENST00000475482 KRTAP5-7Q6L8G8 165 aa4.86□□□□□ -1.63
CPSF3-203ENST00000475482 NDUFAF8A1L188 74 aa4.83□□□□□ -1.64
CPSF3-203ENST00000475482 MT1AP04731 61 aa4.7□□□□□ -1.66
CPSF3-203ENST00000475482 KRTAP6-1Q3LI64 71 aa4.67□□□□□ -1.66
CPSF3-203ENST00000475482 KRTAP5-2Q701N4 177 aa4.67□□□□□ -1.66
CPSF3-203ENST00000475482 A0A0A0MQY5 61 aa4.5□□□□□ -1.69
CPSF3-203ENST00000475482 KRTAP6-2Q3LI66 62 aa4.46□□□□□ -1.7
CPSF3-203ENST00000475482 KRTAP5-8O75690 187 aa4.43□□□□□ -1.7
CPSF3-203ENST00000475482 OBSCNQ5VST9 7968 aa4.32□□□□□ -1.72
CPSF3-203ENST00000475482 MT3P25713 68 aa4.29□□□□□ -1.72
CPSF3-203ENST00000475482 MUC5BQ9HC84 5762 aaPredicted RBP4.19□□□□□ -1.74
CPSF3-203ENST00000475482 KRTAP5-1Q6L8H4 278 aa4.18□□□□□ -1.74
CPSF3-203ENST00000475482 MUC5ACP98088 5654 aa4.18□□□□□ -1.74
CPSF3-203ENST00000475482 AHNAKQ09666 5890 aaKnown RBP4.16□□□□□ -1.74
CPSF3-203ENST00000475482 INE1O15225 51 aa4.09□□□□□ -1.75
CPSF3-203ENST00000475482 LCE3DQ9BYE3 92 aa4.03□□□□□ -1.76
CPSF3-203ENST00000475482 LCE1EQ5T753 118 aa4□□□□□ -1.77
CPSF3-203ENST00000475482 LCE3EQ5T5B0 92 aa3.91□□□□□ -1.78
CPSF3-203ENST00000475482 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.86□□□□□ -1.79
CPSF3-203ENST00000475482 KRTAP5-11Q6L8G4 156 aa3.77□□□□□ -1.81
CPSF3-203ENST00000475482 LCE1CQ5T751 118 aa3.7□□□□□ -1.82
CPSF3-203ENST00000475482 LCE1BQ5T7P3 118 aa3.7□□□□□ -1.82
CPSF3-203ENST00000475482 LCE1FQ5T754 118 aa3.32□□□□□ -1.88
CPSF3-203ENST00000475482 PRM1P04553 51 aa3.31□□□□□ -1.88
CPSF3-203ENST00000475482 KRTAP4-4Q9BYR3 166 aa3.12□□□□□ -1.91
CPSF3-203ENST00000475482 KRTAP21-2Q3LI59 83 aa3.11□□□□□ -1.91
CPSF3-203ENST00000475482 PHGR1C9JFL3 82 aa2.9□□□□□ -1.95
CPSF3-203ENST00000475482 MUC19Q7Z5P9 8384 aa2.67□□□□□ -1.98
CPSF3-203ENST00000475482 KRTAP21-1Q3LI58 79 aa2.21□□□□□ -2.06
CPSF3-203ENST00000475482 MUC16Q8WXI7 14507 aa1.88□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 41.7 ms