RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 KRTAP2-2Q9BYT5 123 aa5.53□□□□□ -1.52
UPF3A-204ENST00000475218 KRTAP2-1Q9BYU5 128 aa5.53□□□□□ -1.52
UPF3A-204ENST00000475218 KRTAP23-1A1A580 65 aa5.52□□□□□ -1.53
UPF3A-204ENST00000475218 A0A0D9SG42 100 aa5.46□□□□□ -1.54
UPF3A-204ENST00000475218 LCE3BQ5TA77 95 aa5.42□□□□□ -1.54
UPF3A-204ENST00000475218 LUZP6Q538Z0 58 aa5.39□□□□□ -1.55
UPF3A-204ENST00000475218 KRTAP12-1P59990 96 aa5.37□□□□□ -1.55
UPF3A-204ENST00000475218 SPINT4Q6UDR6 99 aa5.37□□□□□ -1.55
UPF3A-204ENST00000475218 KRTAP19-7Q3SYF9 63 aa5.34□□□□□ -1.55
UPF3A-204ENST00000475218 CAMK2N1Q7Z7J9 78 aa5.34□□□□□ -1.56
UPF3A-204ENST00000475218 MT1EP04732 61 aa5.28□□□□□ -1.56
UPF3A-204ENST00000475218 LCE5AQ5TCM9 118 aa5.28□□□□□ -1.56
UPF3A-204ENST00000475218 KRTAP15-1Q3LI76 137 aa5.26□□□□□ -1.57
UPF3A-204ENST00000475218 C10orf95Q9H7T3 257 aa5.25□□□□□ -1.57
UPF3A-204ENST00000475218 KRTAP19-3Q7Z4W3 81 aa5.23□□□□□ -1.57
UPF3A-204ENST00000475218 DSTQ03001 7570 aaKnown RBP5.19□□□□□ -1.58
UPF3A-204ENST00000475218 KRTAP19-5Q3LI72 72 aa5.16□□□□□ -1.58
UPF3A-204ENST00000475218 PP632Q6XCG6 107 aa5.11□□□□□ -1.59
UPF3A-204ENST00000475218 KRTAP4-12Q9BQ66 201 aa5.11□□□□□ -1.59
UPF3A-204ENST00000475218 KRTAP9-9Q9BYP9 154 aa5.11□□□□□ -1.59
UPF3A-204ENST00000475218 KRTAP9-4Q9BYQ2 154 aa5.11□□□□□ -1.59
UPF3A-204ENST00000475218 NDUFAF8A1L188 74 aa5.1□□□□□ -1.59
UPF3A-204ENST00000475218 KRTAP4-9Q9BYQ8 210 aa5.09□□□□□ -1.59
UPF3A-204ENST00000475218 MT1GP13640 62 aa5.07□□□□□ -1.6
UPF3A-204ENST00000475218 MT1MQ8N339 61 aa5.03□□□□□ -1.6
UPF3A-204ENST00000475218 MT1LQ93083 61 aa5.03□□□□□ -1.6
UPF3A-204ENST00000475218 GPR98Q8WXG9 6306 aa5.01□□□□□ -1.61
UPF3A-204ENST00000475218 KRTAP4-7Q9BYR0 210 aa5.01□□□□□ -1.61
UPF3A-204ENST00000475218 KRTAP19-4Q3LI73 84 aa4.99□□□□□ -1.61
UPF3A-204ENST00000475218 LCE3AQ5TA76 89 aa4.99□□□□□ -1.61
UPF3A-204ENST00000475218 LCE1DQ5T752 114 aa4.97□□□□□ -1.61
UPF3A-204ENST00000475218 KRTAP4-3Q9BYR4 195 aa4.96□□□□□ -1.62
UPF3A-204ENST00000475218 HMCN1Q96RW7 5635 aa4.93□□□□□ -1.62
UPF3A-204ENST00000475218 TNP1P09430 55 aa4.91□□□□□ -1.62
UPF3A-204ENST00000475218 LCE4AQ5TA78 99 aa4.89□□□□□ -1.63
UPF3A-204ENST00000475218 MT4P47944 62 aa4.87□□□□□ -1.63
UPF3A-204ENST00000475218 KRTAP5-4Q6L8H1 288 aa4.86□□□□□ -1.63
UPF3A-204ENST00000475218 KRTAP4-2Q9BYR5 136 aa4.79□□□□□ -1.64
UPF3A-204ENST00000475218 KRTAP12-3P60328 96 aa4.77□□□□□ -1.65
UPF3A-204ENST00000475218 AHNAK2Q8IVF2 5795 aa4.77□□□□□ -1.65
UPF3A-204ENST00000475218 SPRR5A0A1B0GTR4 108 aa4.71□□□□□ -1.66
UPF3A-204ENST00000475218 KRTAP5-10Q6L8G5 202 aa4.67□□□□□ -1.66
UPF3A-204ENST00000475218 KRTAP5-5Q701N2 237 aaPredicted RBP4.65□□□□□ -1.66
UPF3A-204ENST00000475218 KRTAP5-3Q6L8H2 238 aa4.65□□□□□ -1.67
UPF3A-204ENST00000475218 KRTAP20-2Q3LI61 65 aa4.58□□□□□ -1.68
UPF3A-204ENST00000475218 KRTAP4-11Q9BYQ6 195 aa4.53□□□□□ -1.68
UPF3A-204ENST00000475218 KRTAP5-7Q6L8G8 165 aa4.48□□□□□ -1.69
UPF3A-204ENST00000475218 KRTAP12-4P60329 112 aa4.44□□□□□ -1.7
UPF3A-204ENST00000475218 SYNE1Q8NF91 8797 aaKnown RBP4.41□□□□□ -1.7
UPF3A-204ENST00000475218 LCE3CQ5T5A8 94 aa4.4□□□□□ -1.71
UPF3A-204ENST00000475218 INE1O15225 51 aa4.33□□□□□ -1.72
UPF3A-204ENST00000475218 KRTAP6-1Q3LI64 71 aa4.27□□□□□ -1.73
UPF3A-204ENST00000475218 MT1AP04731 61 aa4.26□□□□□ -1.73
UPF3A-204ENST00000475218 KRTAP5-2Q701N4 177 aa4.25□□□□□ -1.73
UPF3A-204ENST00000475218 KRTAP9-6A8MVA2 160 aa4.24□□□□□ -1.73
UPF3A-204ENST00000475218 KRTAP6-2Q3LI66 62 aa4.08□□□□□ -1.76
UPF3A-204ENST00000475218 KRTAP5-8O75690 187 aa4.07□□□□□ -1.76
UPF3A-204ENST00000475218 OBSCNQ5VST9 7968 aa3.96□□□□□ -1.78
UPF3A-204ENST00000475218 MUC5BQ9HC84 5762 aaPredicted RBP3.92□□□□□ -1.78
UPF3A-204ENST00000475218 MUC5ACP98088 5654 aa3.92□□□□□ -1.78
UPF3A-204ENST00000475218 AHNAKQ09666 5890 aaKnown RBP3.9□□□□□ -1.79
UPF3A-204ENST00000475218 MT3P25713 68 aa3.86□□□□□ -1.79
UPF3A-204ENST00000475218 KRTAP5-1Q6L8H4 278 aa3.83□□□□□ -1.8
UPF3A-204ENST00000475218 LCE1EQ5T753 118 aa3.58□□□□□ -1.84
UPF3A-204ENST00000475218 LCE1BQ5T7P3 118 aa3.38□□□□□ -1.87
UPF3A-204ENST00000475218 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.35□□□□□ -1.87
UPF3A-204ENST00000475218 LCE1CQ5T751 118 aa3.34□□□□□ -1.87
UPF3A-204ENST00000475218 LCE1FQ5T754 118 aa3.34□□□□□ -1.87
UPF3A-204ENST00000475218 LCE3DQ9BYE3 92 aa3.15□□□□□ -1.9
UPF3A-204ENST00000475218 LCE3EQ5T5B0 92 aa3.14□□□□□ -1.91
UPF3A-204ENST00000475218 KRTAP5-11Q6L8G4 156 aa3.04□□□□□ -1.92
UPF3A-204ENST00000475218 PRM1P04553 51 aa2.95□□□□□ -1.94
UPF3A-204ENST00000475218 KRTAP21-2Q3LI59 83 aa2.83□□□□□ -1.96
UPF3A-204ENST00000475218 KRTAP4-4Q9BYR3 166 aa2.79□□□□□ -1.96
UPF3A-204ENST00000475218 PHGR1C9JFL3 82 aa2.68□□□□□ -1.98
UPF3A-204ENST00000475218 MUC19Q7Z5P9 8384 aa2.42□□□□□ -2.02
UPF3A-204ENST00000475218 KRTAP21-1Q3LI58 79 aa2.02□□□□□ -2.09
UPF3A-204ENST00000475218 MUC16Q8WXI7 14507 aa1.71□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 84.2 ms