RNA–Protein interactions for RNA: ENST00000474391.1

COL4A1-203, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 2

Gene COL4A1, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-203ENST00000474391 SPINT4Q6UDR6 99 aa3.97□□□□□ -1.77
COL4A1-203ENST00000474391 MT1EP04732 61 aa3.93□□□□□ -1.78
COL4A1-203ENST00000474391 LCE5AQ5TCM9 118 aa3.92□□□□□ -1.78
COL4A1-203ENST00000474391 KRTAP19-3Q7Z4W3 81 aa3.89□□□□□ -1.79
COL4A1-203ENST00000474391 DSTQ03001 7570 aaKnown RBP3.88□□□□□ -1.79
COL4A1-203ENST00000474391 KRTAP19-5Q3LI72 72 aa3.85□□□□□ -1.79
COL4A1-203ENST00000474391 C10orf95Q9H7T3 257 aa3.82□□□□□ -1.8
COL4A1-203ENST00000474391 MT1GP13640 62 aa3.81□□□□□ -1.8
COL4A1-203ENST00000474391 TNP1P09430 55 aa3.78□□□□□ -1.8
COL4A1-203ENST00000474391 PRAC1Q96KF2 57 aa3.78□□□□□ -1.8
COL4A1-203ENST00000474391 ROMO1P60602 79 aa3.77□□□□□ -1.81
COL4A1-203ENST00000474391 LCE3AQ5TA76 89 aa3.77□□□□□ -1.81
COL4A1-203ENST00000474391 PP632Q6XCG6 107 aa3.76□□□□□ -1.81
COL4A1-203ENST00000474391 MT1LQ93083 61 aa3.76□□□□□ -1.81
COL4A1-203ENST00000474391 LOC100996750A0A140TA64 210 aa3.74□□□□□ -1.81
COL4A1-203ENST00000474391 MT1MQ8N339 61 aa3.74□□□□□ -1.81
COL4A1-203ENST00000474391 KRTAP4-6Q9BYQ5 205 aa3.74□□□□□ -1.81
COL4A1-203ENST00000474391 KRTAP25-1Q3LHN0 102 aa3.7□□□□□ -1.82
COL4A1-203ENST00000474391 KRTAP4-9Q9BYQ8 210 aa3.68□□□□□ -1.82
COL4A1-203ENST00000474391 KRTAP23-1A1A580 65 aa3.63□□□□□ -1.83
COL4A1-203ENST00000474391 KRTAP12-3P60328 96 aa3.63□□□□□ -1.83
COL4A1-203ENST00000474391 KRTAP4-3Q9BYR4 195 aa3.63□□□□□ -1.83
COL4A1-203ENST00000474391 LCE4AQ5TA78 99 aa3.62□□□□□ -1.83
COL4A1-203ENST00000474391 GPR98Q8WXG9 6306 aa3.61□□□□□ -1.83
COL4A1-203ENST00000474391 LCE1DQ5T752 114 aa3.61□□□□□ -1.83
COL4A1-203ENST00000474391 KRTAP5-4Q6L8H1 288 aa3.59□□□□□ -1.83
COL4A1-203ENST00000474391 H3BS24 57 aa3.56□□□□□ -1.84
COL4A1-203ENST00000474391 KRTAP4-7Q9BYR0 210 aa3.56□□□□□ -1.84
COL4A1-203ENST00000474391 MT4P47944 62 aa3.55□□□□□ -1.84
COL4A1-203ENST00000474391 HMCN1Q96RW7 5635 aa3.53□□□□□ -1.84
COL4A1-203ENST00000474391 KRTAP19-4Q3LI73 84 aa3.47□□□□□ -1.85
COL4A1-203ENST00000474391 KRTAP5-5Q701N2 237 aaPredicted RBP3.45□□□□□ -1.86
COL4A1-203ENST00000474391 KRTAP15-1Q3LI76 137 aa3.4□□□□□ -1.87
COL4A1-203ENST00000474391 SPRR5A0A1B0GTR4 108 aa3.36□□□□□ -1.87
COL4A1-203ENST00000474391 KRTAP20-2Q3LI61 65 aa3.36□□□□□ -1.87
COL4A1-203ENST00000474391 KRTAP5-10Q6L8G5 202 aa3.36□□□□□ -1.87
COL4A1-203ENST00000474391 LCE3CQ5T5A8 94 aa3.35□□□□□ -1.87
COL4A1-203ENST00000474391 AHNAK2Q8IVF2 5795 aa3.35□□□□□ -1.87
COL4A1-203ENST00000474391 SYNE1Q8NF91 8797 aaKnown RBP3.32□□□□□ -1.88
COL4A1-203ENST00000474391 KRTAP12-4P60329 112 aa3.32□□□□□ -1.88
COL4A1-203ENST00000474391 KRTAP5-3Q6L8H2 238 aa3.29□□□□□ -1.88
COL4A1-203ENST00000474391 LUZP6Q538Z0 58 aa3.27□□□□□ -1.89
COL4A1-203ENST00000474391 NDUFAF8A1L188 74 aa3.25□□□□□ -1.89
COL4A1-203ENST00000474391 KRTAP5-7Q6L8G8 165 aa3.23□□□□□ -1.89
COL4A1-203ENST00000474391 MT1AP04731 61 aa3.19□□□□□ -1.9
COL4A1-203ENST00000474391 KRTAP9-6A8MVA2 160 aa3.18□□□□□ -1.9
COL4A1-203ENST00000474391 KRTAP6-1Q3LI64 71 aa3.17□□□□□ -1.9
COL4A1-203ENST00000474391 KRTAP5-2Q701N4 177 aa3.14□□□□□ -1.91
COL4A1-203ENST00000474391 KRTAP9-9Q9BYP9 154 aa3.14□□□□□ -1.91
COL4A1-203ENST00000474391 KRTAP9-4Q9BYQ2 154 aa3.14□□□□□ -1.91
COL4A1-203ENST00000474391 KRTAP4-12Q9BQ66 201 aa3.13□□□□□ -1.91
COL4A1-203ENST00000474391 A0A0A0MQY5 61 aa3.07□□□□□ -1.92
COL4A1-203ENST00000474391 KRTAP4-11Q9BYQ6 195 aa3.06□□□□□ -1.92
COL4A1-203ENST00000474391 KRTAP6-2Q3LI66 62 aa3.02□□□□□ -1.93
COL4A1-203ENST00000474391 OBSCNQ5VST9 7968 aa3□□□□□ -1.93
COL4A1-203ENST00000474391 KRTAP5-8O75690 187 aa2.97□□□□□ -1.93
COL4A1-203ENST00000474391 MT3P25713 68 aa2.92□□□□□ -1.94
COL4A1-203ENST00000474391 KRTAP4-2Q9BYR5 136 aa2.91□□□□□ -1.94
COL4A1-203ENST00000474391 KRTAP5-1Q6L8H4 278 aa2.81□□□□□ -1.96
COL4A1-203ENST00000474391 MUC5ACP98088 5654 aa2.8□□□□□ -1.96
COL4A1-203ENST00000474391 MUC5BQ9HC84 5762 aaPredicted RBP2.78□□□□□ -1.96
COL4A1-203ENST00000474391 INE1O15225 51 aa2.77□□□□□ -1.97
COL4A1-203ENST00000474391 AHNAKQ09666 5890 aaKnown RBP2.75□□□□□ -1.97
COL4A1-203ENST00000474391 LCE1EQ5T753 118 aa2.7□□□□□ -1.98
COL4A1-203ENST00000474391 LCE1CQ5T751 118 aa2.51□□□□□ -2.01
COL4A1-203ENST00000474391 LCE1BQ5T7P3 118 aa2.51□□□□□ -2.01
COL4A1-203ENST00000474391 LCE3DQ9BYE3 92 aa2.41□□□□□ -2.02
COL4A1-203ENST00000474391 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.3□□□□□ -2.04
COL4A1-203ENST00000474391 LCE3EQ5T5B0 92 aa2.28□□□□□ -2.04
COL4A1-203ENST00000474391 KRTAP5-11Q6L8G4 156 aa2.27□□□□□ -2.05
COL4A1-203ENST00000474391 LCE1FQ5T754 118 aa2.21□□□□□ -2.06
COL4A1-203ENST00000474391 KRTAP21-2Q3LI59 83 aa2.11□□□□□ -2.07
COL4A1-203ENST00000474391 PHGR1C9JFL3 82 aa1.96□□□□□ -2.1
COL4A1-203ENST00000474391 PRM1P04553 51 aa1.95□□□□□ -2.1
COL4A1-203ENST00000474391 KRTAP4-4Q9BYR3 166 aa1.89□□□□□ -2.11
COL4A1-203ENST00000474391 MUC19Q7Z5P9 8384 aa1.84□□□□□ -2.11
COL4A1-203ENST00000474391 KRTAP21-1Q3LI58 79 aa1.48□□□□□ -2.17
COL4A1-203ENST00000474391 MUC16Q8WXI7 14507 aa1.23□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 74.7 ms