RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 HMCN1Q96RW7 5635 aa6.74□□□□□ -1.33
CCDC88B-206ENST00000473405 PP632Q6XCG6 107 aa6.71□□□□□ -1.34
CCDC88B-206ENST00000473405 MIR22HGQ0VDD5 57 aa6.7□□□□□ -1.34
CCDC88B-206ENST00000473405 LCE1DQ5T752 114 aa6.7□□□□□ -1.34
CCDC88B-206ENST00000473405 MT1MQ8N339 61 aa6.7□□□□□ -1.34
CCDC88B-206ENST00000473405 MT1LQ93083 61 aa6.69□□□□□ -1.34
CCDC88B-206ENST00000473405 A6NED7 52 aa6.64□□□□□ -1.35
CCDC88B-206ENST00000473405 LCE3AQ5TA76 89 aa6.61□□□□□ -1.35
CCDC88B-206ENST00000473405 LCE4AQ5TA78 99 aa6.61□□□□□ -1.35
CCDC88B-206ENST00000473405 C10orf95Q9H7T3 257 aa6.59□□□□□ -1.35
CCDC88B-206ENST00000473405 MT4P47944 62 aa6.58□□□□□ -1.36
CCDC88B-206ENST00000473405 KRTAP4-3Q9BYR4 195 aa6.57□□□□□ -1.36
CCDC88B-206ENST00000473405 CDC42SE1Q9NRR8 79 aa6.53□□□□□ -1.36
CCDC88B-206ENST00000473405 AHNAK2Q8IVF2 5795 aa6.52□□□□□ -1.37
CCDC88B-206ENST00000473405 TNP1P09430 55 aa6.52□□□□□ -1.37
CCDC88B-206ENST00000473405 KRTAP5-4Q6L8H1 288 aa6.51□□□□□ -1.37
CCDC88B-206ENST00000473405 KRTAP4-6Q9BYQ5 205 aa6.4□□□□□ -1.38
CCDC88B-206ENST00000473405 K7ERS5 55 aa6.37□□□□□ -1.39
CCDC88B-206ENST00000473405 KRTAP4-7Q9BYR0 210 aa6.36□□□□□ -1.39
CCDC88B-206ENST00000473405 KRTAP12-3P60328 96 aa6.34□□□□□ -1.39
CCDC88B-206ENST00000473405 KRTAP5-10Q6L8G5 202 aa6.33□□□□□ -1.4
CCDC88B-206ENST00000473405 BRK1Q8WUW1 75 aa6.3□□□□□ -1.4
CCDC88B-206ENST00000473405 KRTAP5-5Q701N2 237 aaPredicted RBP6.19□□□□□ -1.42
CCDC88B-206ENST00000473405 ROMO1P60602 79 aa6.15□□□□□ -1.42
CCDC88B-206ENST00000473405 KRTAP20-2Q3LI61 65 aa6.15□□□□□ -1.42
CCDC88B-206ENST00000473405 KRTAP25-1Q3LHN0 102 aa6.14□□□□□ -1.43
CCDC88B-206ENST00000473405 KRTAP5-3Q6L8H2 238 aa6.12□□□□□ -1.43
CCDC88B-206ENST00000473405 SPRR5A0A1B0GTR4 108 aa6.08□□□□□ -1.44
CCDC88B-206ENST00000473405 KRTAP5-7Q6L8G8 165 aa6.08□□□□□ -1.44
CCDC88B-206ENST00000473405 LOC100996750A0A140TA64 210 aa6.04□□□□□ -1.44
CCDC88B-206ENST00000473405 SYNE1Q8NF91 8797 aaKnown RBP6.03□□□□□ -1.44
CCDC88B-206ENST00000473405 PRO0628Q9UI54 55 aa6.01□□□□□ -1.45
CCDC88B-206ENST00000473405 KRTAP12-4P60329 112 aa6□□□□□ -1.45
CCDC88B-206ENST00000473405 KRTAP23-1A1A580 65 aa5.97□□□□□ -1.45
CCDC88B-206ENST00000473405 PMAIP1Q13794 54 aa5.93□□□□□ -1.46
CCDC88B-206ENST00000473405 KRTAP19-4Q3LI73 84 aa5.92□□□□□ -1.46
CCDC88B-206ENST00000473405 KRTAP15-1Q3LI76 137 aa5.85□□□□□ -1.47
CCDC88B-206ENST00000473405 LCE3CQ5T5A8 94 aa5.82□□□□□ -1.48
CCDC88B-206ENST00000473405 KRTAP5-2Q701N4 177 aa5.69□□□□□ -1.5
CCDC88B-206ENST00000473405 MT1AP04731 61 aa5.67□□□□□ -1.5
CCDC88B-206ENST00000473405 KRTAP6-1Q3LI64 71 aa5.67□□□□□ -1.5
CCDC88B-206ENST00000473405 PRAC1Q96KF2 57 aa5.66□□□□□ -1.5
CCDC88B-206ENST00000473405 KRTAP4-11Q9BYQ6 195 aa5.64□□□□□ -1.51
CCDC88B-206ENST00000473405 KTN1-AS1Q86SY8 53 aa5.62□□□□□ -1.51
CCDC88B-206ENST00000473405 KRTAP9-6A8MVA2 160 aa5.56□□□□□ -1.52
CCDC88B-206ENST00000473405 KRTAP9-4Q9BYQ2 154 aa5.49□□□□□ -1.53
CCDC88B-206ENST00000473405 KRTAP5-8O75690 187 aa5.47□□□□□ -1.53
CCDC88B-206ENST00000473405 OBSCNQ5VST9 7968 aa5.47□□□□□ -1.53
CCDC88B-206ENST00000473405 KRTAP6-2Q3LI66 62 aa5.45□□□□□ -1.54
CCDC88B-206ENST00000473405 MUC5BQ9HC84 5762 aaPredicted RBP5.44□□□□□ -1.54
CCDC88B-206ENST00000473405 MUC5ACP98088 5654 aa5.43□□□□□ -1.54
CCDC88B-206ENST00000473405 AHNAKQ09666 5890 aaKnown RBP5.42□□□□□ -1.54
CCDC88B-206ENST00000473405 SVIPQ8NHG7 77 aa5.22□□□□□ -1.57
CCDC88B-206ENST00000473405 MT3P25713 68 aa5.17□□□□□ -1.58
CCDC88B-206ENST00000473405 KRTAP9-9Q9BYP9 154 aa5.17□□□□□ -1.58
CCDC88B-206ENST00000473405 KRTAP5-1Q6L8H4 278 aa5.12□□□□□ -1.59
CCDC88B-206ENST00000473405 LCE1EQ5T753 118 aa4.81□□□□□ -1.64
CCDC88B-206ENST00000473405 KRTAP4-2Q9BYR5 136 aa4.6□□□□□ -1.67
CCDC88B-206ENST00000473405 LUZP6Q538Z0 58 aa4.55□□□□□ -1.68
CCDC88B-206ENST00000473405 LCE1BQ5T7P3 118 aa4.53□□□□□ -1.68
CCDC88B-206ENST00000473405 LCE1CQ5T751 118 aa4.48□□□□□ -1.69
CCDC88B-206ENST00000473405 NDUFAF8A1L188 74 aa4.25□□□□□ -1.73
CCDC88B-206ENST00000473405 KRTAP4-12Q9BQ66 201 aa4.2□□□□□ -1.74
CCDC88B-206ENST00000473405 LCE3DQ9BYE3 92 aa4.14□□□□□ -1.75
CCDC88B-206ENST00000473405 KRTAP5-11Q6L8G4 156 aa4.08□□□□□ -1.76
CCDC88B-206ENST00000473405 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.07□□□□□ -1.76
CCDC88B-206ENST00000473405 LCE1FQ5T754 118 aa3.97□□□□□ -1.77
CCDC88B-206ENST00000473405 LCE3EQ5T5B0 92 aa3.85□□□□□ -1.79
CCDC88B-206ENST00000473405 KRTAP21-2Q3LI59 83 aa3.75□□□□□ -1.81
CCDC88B-206ENST00000473405 PHGR1C9JFL3 82 aa3.66□□□□□ -1.82
CCDC88B-206ENST00000473405 A0A0A0MQY5 61 aa3.56□□□□□ -1.84
CCDC88B-206ENST00000473405 INE1O15225 51 aa3.5□□□□□ -1.85
CCDC88B-206ENST00000473405 KRTAP4-4Q9BYR3 166 aa3.44□□□□□ -1.86
CCDC88B-206ENST00000473405 MUC19Q7Z5P9 8384 aa3.37□□□□□ -1.87
CCDC88B-206ENST00000473405 PRM1P04553 51 aa3.18□□□□□ -1.9
CCDC88B-206ENST00000473405 H3BS24 57 aa3.03□□□□□ -1.92
CCDC88B-206ENST00000473405 KRTAP21-1Q3LI58 79 aa2.77□□□□□ -1.97
CCDC88B-206ENST00000473405 MUC16Q8WXI7 14507 aa2.38□□□□□ -2.03
Retrieved 78 of 20,778 RNA–protein pairs in 97.7 ms