RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 CDC42SE1Q9NRR8 79 aa6.1□□□□□ -1.43
USP40-212ENST00000473191 BRK1Q8WUW1 75 aa6.06□□□□□ -1.44
USP40-212ENST00000473191 K7ERS5 55 aa6.03□□□□□ -1.44
USP40-212ENST00000473191 MT1GP13640 62 aa5.99□□□□□ -1.45
USP40-212ENST00000473191 MT1MQ8N339 61 aa5.94□□□□□ -1.46
USP40-212ENST00000473191 MT1LQ93083 61 aa5.93□□□□□ -1.46
USP40-212ENST00000473191 LCE1DQ5T752 114 aa5.92□□□□□ -1.46
USP40-212ENST00000473191 LCE3AQ5TA76 89 aa5.9□□□□□ -1.46
USP40-212ENST00000473191 KRTAP4-3Q9BYR4 195 aa5.9□□□□□ -1.46
USP40-212ENST00000473191 GPR98Q8WXG9 6306 aa5.89□□□□□ -1.47
USP40-212ENST00000473191 C10orf95Q9H7T3 257 aa5.89□□□□□ -1.47
USP40-212ENST00000473191 PP632Q6XCG6 107 aa5.88□□□□□ -1.47
USP40-212ENST00000473191 MT4P47944 62 aa5.85□□□□□ -1.47
USP40-212ENST00000473191 PRO0628Q9UI54 55 aa5.81□□□□□ -1.48
USP40-212ENST00000473191 LCE4AQ5TA78 99 aa5.79□□□□□ -1.48
USP40-212ENST00000473191 TNP1P09430 55 aa5.78□□□□□ -1.48
USP40-212ENST00000473191 HMCN1Q96RW7 5635 aa5.76□□□□□ -1.49
USP40-212ENST00000473191 KRTAP4-7Q9BYR0 210 aa5.74□□□□□ -1.49
USP40-212ENST00000473191 KRTAP5-4Q6L8H1 288 aa5.72□□□□□ -1.49
USP40-212ENST00000473191 PMAIP1Q13794 54 aa5.71□□□□□ -1.5
USP40-212ENST00000473191 KRTAP4-6Q9BYQ5 205 aa5.7□□□□□ -1.5
USP40-212ENST00000473191 ROMO1P60602 79 aa5.69□□□□□ -1.5
USP40-212ENST00000473191 KRTAP12-3P60328 96 aa5.62□□□□□ -1.51
USP40-212ENST00000473191 AHNAK2Q8IVF2 5795 aa5.59□□□□□ -1.51
USP40-212ENST00000473191 KRTAP25-1Q3LHN0 102 aa5.56□□□□□ -1.52
USP40-212ENST00000473191 KRTAP5-10Q6L8G5 202 aa5.55□□□□□ -1.52
USP40-212ENST00000473191 KRTAP5-5Q701N2 237 aaPredicted RBP5.47□□□□□ -1.53
USP40-212ENST00000473191 LOC100996750A0A140TA64 210 aa5.44□□□□□ -1.54
USP40-212ENST00000473191 KRTAP20-2Q3LI61 65 aa5.42□□□□□ -1.54
USP40-212ENST00000473191 KTN1-AS1Q86SY8 53 aa5.42□□□□□ -1.54
USP40-212ENST00000473191 KRTAP5-3Q6L8H2 238 aa5.39□□□□□ -1.55
USP40-212ENST00000473191 SYNE1Q8NF91 8797 aaKnown RBP5.35□□□□□ -1.55
USP40-212ENST00000473191 KRTAP23-1A1A580 65 aa5.34□□□□□ -1.55
USP40-212ENST00000473191 PRAC1Q96KF2 57 aa5.34□□□□□ -1.55
USP40-212ENST00000473191 SPRR5A0A1B0GTR4 108 aa5.31□□□□□ -1.56
USP40-212ENST00000473191 KRTAP5-7Q6L8G8 165 aa5.31□□□□□ -1.56
USP40-212ENST00000473191 KRTAP12-4P60329 112 aa5.26□□□□□ -1.57
USP40-212ENST00000473191 KRTAP15-1Q3LI76 137 aa5.2□□□□□ -1.58
USP40-212ENST00000473191 SVIPQ8NHG7 77 aa5.19□□□□□ -1.58
USP40-212ENST00000473191 LCE3CQ5T5A8 94 aa5.17□□□□□ -1.58
USP40-212ENST00000473191 KRTAP19-4Q3LI73 84 aa5.13□□□□□ -1.59
USP40-212ENST00000473191 KRTAP6-1Q3LI64 71 aa5.06□□□□□ -1.6
USP40-212ENST00000473191 MT1AP04731 61 aa5.02□□□□□ -1.61
USP40-212ENST00000473191 KRTAP5-2Q701N4 177 aa5□□□□□ -1.61
USP40-212ENST00000473191 KRTAP9-6A8MVA2 160 aa4.98□□□□□ -1.61
USP40-212ENST00000473191 KRTAP4-11Q9BYQ6 195 aa4.96□□□□□ -1.62
USP40-212ENST00000473191 KRTAP9-4Q9BYQ2 154 aa4.87□□□□□ -1.63
USP40-212ENST00000473191 KRTAP6-2Q3LI66 62 aa4.84□□□□□ -1.63
USP40-212ENST00000473191 KRTAP5-8O75690 187 aa4.83□□□□□ -1.64
USP40-212ENST00000473191 OBSCNQ5VST9 7968 aa4.74□□□□□ -1.65
USP40-212ENST00000473191 MUC5ACP98088 5654 aa4.58□□□□□ -1.68
USP40-212ENST00000473191 MUC5BQ9HC84 5762 aaPredicted RBP4.57□□□□□ -1.68
USP40-212ENST00000473191 MT3P25713 68 aa4.56□□□□□ -1.68
USP40-212ENST00000473191 AHNAKQ09666 5890 aaKnown RBP4.54□□□□□ -1.68
USP40-212ENST00000473191 KRTAP5-1Q6L8H4 278 aa4.53□□□□□ -1.68
USP40-212ENST00000473191 KRTAP9-9Q9BYP9 154 aa4.53□□□□□ -1.68
USP40-212ENST00000473191 LUZP6Q538Z0 58 aa4.46□□□□□ -1.7
USP40-212ENST00000473191 LCE1EQ5T753 118 aa4.2□□□□□ -1.74
USP40-212ENST00000473191 NDUFAF8A1L188 74 aa4.17□□□□□ -1.74
USP40-212ENST00000473191 KRTAP4-2Q9BYR5 136 aa4.08□□□□□ -1.76
USP40-212ENST00000473191 LCE1BQ5T7P3 118 aa4.04□□□□□ -1.76
USP40-212ENST00000473191 LCE1CQ5T751 118 aa3.92□□□□□ -1.78
USP40-212ENST00000473191 KRTAP4-12Q9BQ66 201 aa3.77□□□□□ -1.81
USP40-212ENST00000473191 A0A0A0MQY5 61 aa3.68□□□□□ -1.82
USP40-212ENST00000473191 LCE3DQ9BYE3 92 aa3.67□□□□□ -1.82
USP40-212ENST00000473191 KRTAP5-11Q6L8G4 156 aa3.57□□□□□ -1.84
USP40-212ENST00000473191 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.55□□□□□ -1.84
USP40-212ENST00000473191 LCE3EQ5T5B0 92 aa3.47□□□□□ -1.85
USP40-212ENST00000473191 INE1O15225 51 aa3.46□□□□□ -1.86
USP40-212ENST00000473191 LCE1FQ5T754 118 aa3.45□□□□□ -1.86
USP40-212ENST00000473191 H3BS24 57 aa3.35□□□□□ -1.87
USP40-212ENST00000473191 KRTAP21-2Q3LI59 83 aa3.33□□□□□ -1.88
USP40-212ENST00000473191 PHGR1C9JFL3 82 aa3.22□□□□□ -1.89
USP40-212ENST00000473191 KRTAP4-4Q9BYR3 166 aa3.12□□□□□ -1.91
USP40-212ENST00000473191 PRM1P04553 51 aa2.94□□□□□ -1.94
USP40-212ENST00000473191 MUC19Q7Z5P9 8384 aa2.92□□□□□ -1.94
USP40-212ENST00000473191 KRTAP21-1Q3LI58 79 aa2.4□□□□□ -2.03
USP40-212ENST00000473191 MUC16Q8WXI7 14507 aa2.1□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 100.6 ms