RNA–Protein interactions for RNA: ENST00000471894.1

PUM1-208, Transcript of pumilio RNA binding family member 1, human

TSL 3

Gene PUM1, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUM1-208	ENST00000471894	KRTAP8-1	Q8IUC2	63 aa		4.04	□□□□□ -1.76
PUM1-208	ENST00000471894	KMT2D	O14686	5537 aa		3.98	□□□□□ -1.77
PUM1-208	ENST00000471894	MACF1	Q9UPN3	7388 aa	Known RBP	3.98	□□□□□ -1.77
PUM1-208	ENST00000471894	PP632	Q6XCG6	107 aa		3.97	□□□□□ -1.77
PUM1-208	ENST00000471894	KRTAP6-3	Q3LI67	103 aa		3.95	□□□□□ -1.78
PUM1-208	ENST00000471894	KRTAP19-5	Q3LI72	72 aa		3.94	□□□□□ -1.78
PUM1-208	ENST00000471894	KTN1-AS1	Q86SY8	53 aa		3.93	□□□□□ -1.78
PUM1-208	ENST00000471894	SPRR2F	Q96RM1	72 aa		3.93	□□□□□ -1.78
PUM1-208	ENST00000471894	PRAC1	Q96KF2	57 aa		3.92	□□□□□ -1.78
PUM1-208	ENST00000471894	KRTAP5-9	P26371	169 aa		3.91	□□□□□ -1.78
PUM1-208	ENST00000471894	KRTAP19-7	Q3SYF9	63 aa		3.91	□□□□□ -1.78
PUM1-208	ENST00000471894	KRTAP12-3	P60328	96 aa		3.89	□□□□□ -1.79
PUM1-208	ENST00000471894	SYNE2	Q8WXH0	6885 aa	Known RBP	3.88	□□□□□ -1.79
PUM1-208	ENST00000471894		A0A0A0MQY5	61 aa		3.88	□□□□□ -1.79
PUM1-208	ENST00000471894	MT1E	P04732	61 aa		3.85	□□□□□ -1.79
PUM1-208	ENST00000471894	SPRR2E	P22531	72 aa		3.78	□□□□□ -1.8
PUM1-208	ENST00000471894	SPRR2B	P35325	72 aa		3.78	□□□□□ -1.8
PUM1-208	ENST00000471894	SPRR2A	P35326	72 aa		3.78	□□□□□ -1.8
PUM1-208	ENST00000471894	LCE1A	Q5T7P2	110 aa		3.77	□□□□□ -1.81
PUM1-208	ENST00000471894	MT1L	Q93083	61 aa		3.76	□□□□□ -1.81
PUM1-208	ENST00000471894	KRTAP19-3	Q7Z4W3	81 aa		3.75	□□□□□ -1.81
PUM1-208	ENST00000471894	MUC12	Q9UKN1	5478 aa		3.74	□□□□□ -1.81
PUM1-208	ENST00000471894	MT1G	P13640	62 aa		3.72	□□□□□ -1.81
PUM1-208	ENST00000471894	KRTAP5-3	Q6L8H2	238 aa		3.67	□□□□□ -1.82
PUM1-208	ENST00000471894	SPRR2D	P22532	72 aa		3.65	□□□□□ -1.83
PUM1-208	ENST00000471894	MT1M	Q8N339	61 aa		3.65	□□□□□ -1.83
PUM1-208	ENST00000471894	MDN1	Q9NU22	5596 aa		3.65	□□□□□ -1.83
PUM1-208	ENST00000471894	LCE3C	Q5T5A8	94 aa		3.62	□□□□□ -1.83
PUM1-208	ENST00000471894	NEB	P20929	6669 aa		3.57	□□□□□ -1.84
PUM1-208	ENST00000471894	KRTAP4-3	Q9BYR4	195 aa		3.56	□□□□□ -1.84
PUM1-208	ENST00000471894	KRTAP2-3	P0C7H8	128 aa		3.51	□□□□□ -1.85
PUM1-208	ENST00000471894	KRTAP2-4	Q9BYR9	128 aa		3.51	□□□□□ -1.85
PUM1-208	ENST00000471894	KRTAP20-1	Q3LI63	56 aa		3.49	□□□□□ -1.85
PUM1-208	ENST00000471894	MT3	P25713	68 aa		3.46	□□□□□ -1.86
PUM1-208	ENST00000471894	KRTAP2-2	Q9BYT5	123 aa		3.43	□□□□□ -1.86
PUM1-208	ENST00000471894	KRTAP2-1	Q9BYU5	128 aa		3.42	□□□□□ -1.86
PUM1-208	ENST00000471894	SPRR5	A0A1B0GTR4	108 aa		3.41	□□□□□ -1.86
PUM1-208	ENST00000471894	KRTAP9-6	A8MVA2	160 aa		3.39	□□□□□ -1.87
PUM1-208	ENST00000471894	DST	Q03001	7570 aa	Known RBP	3.38	□□□□□ -1.87
PUM1-208	ENST00000471894	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.29	□□□□□ -1.88
PUM1-208	ENST00000471894	LUZP6	Q538Z0	58 aa		3.26	□□□□□ -1.89
PUM1-208	ENST00000471894	KRTAP5-4	Q6L8H1	288 aa		3.23	□□□□□ -1.89
PUM1-208	ENST00000471894	MT1A	P04731	61 aa		3.2	□□□□□ -1.9
PUM1-208	ENST00000471894	MT4	P47944	62 aa		3.17	□□□□□ -1.9
PUM1-208	ENST00000471894	KRTAP6-1	Q3LI64	71 aa		3.17	□□□□□ -1.9
PUM1-208	ENST00000471894	KRTAP12-4	P60329	112 aa		3.15	□□□□□ -1.91
PUM1-208	ENST00000471894	NDUFAF8	A1L188	74 aa		3.13	□□□□□ -1.91
PUM1-208	ENST00000471894	LCE1E	Q5T753	118 aa		3.07	□□□□□ -1.92
PUM1-208	ENST00000471894	LCE1F	Q5T754	118 aa		3.06	□□□□□ -1.92
PUM1-208	ENST00000471894	SYNE1	Q8NF91	8797 aa	Known RBP	3.05	□□□□□ -1.92
PUM1-208	ENST00000471894	KRTAP20-2	Q3LI61	65 aa		3.04	□□□□□ -1.92
PUM1-208	ENST00000471894	HMCN1	Q96RW7	5635 aa		2.98	□□□□□ -1.93
PUM1-208	ENST00000471894	KRTAP5-11	Q6L8G4	156 aa		2.97	□□□□□ -1.93
PUM1-208	ENST00000471894	KRTAP6-2	Q3LI66	62 aa		2.96	□□□□□ -1.94
PUM1-208	ENST00000471894	KRTAP5-2	Q701N4	177 aa		2.89	□□□□□ -1.95
PUM1-208	ENST00000471894	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.86	□□□□□ -1.95
PUM1-208	ENST00000471894	AHNAK2	Q8IVF2	5795 aa		2.71	□□□□□ -1.98
PUM1-208	ENST00000471894	LCE3D	Q9BYE3	92 aa		2.7	□□□□□ -1.98
PUM1-208	ENST00000471894	KRTAP5-10	Q6L8G5	202 aa		2.69	□□□□□ -1.98
PUM1-208	ENST00000471894	GPR98	Q8WXG9	6306 aa		2.68	□□□□□ -1.98
PUM1-208	ENST00000471894	LCE3E	Q5T5B0	92 aa		2.61	□□□□□ -1.99
PUM1-208	ENST00000471894	OBSCN	Q5VST9	7968 aa		2.59	□□□□□ -2
PUM1-208	ENST00000471894	KRTAP5-8	O75690	187 aa		2.57	□□□□□ -2
PUM1-208	ENST00000471894	KRTAP5-7	Q6L8G8	165 aa		2.53	□□□□□ -2
PUM1-208	ENST00000471894	KRTAP5-1	Q6L8H4	278 aa		2.53	□□□□□ -2
PUM1-208	ENST00000471894	INE1	O15225	51 aa		2.5	□□□□□ -2.01
PUM1-208	ENST00000471894	LCE1B	Q5T7P3	118 aa		2.43	□□□□□ -2.02
PUM1-208	ENST00000471894	LCE1C	Q5T751	118 aa		2.39	□□□□□ -2.03
PUM1-208	ENST00000471894	MUC5AC	P98088	5654 aa		2.36	□□□□□ -2.03
PUM1-208	ENST00000471894	KRTAP4-4	Q9BYR3	166 aa		2.34	□□□□□ -2.03
PUM1-208	ENST00000471894	PRM1	P04553	51 aa		2.18	□□□□□ -2.06
PUM1-208	ENST00000471894	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.16	□□□□□ -2.06
PUM1-208	ENST00000471894	KRTAP21-2	Q3LI59	83 aa		2.07	□□□□□ -2.08
PUM1-208	ENST00000471894	AHNAK	Q09666	5890 aa	Known RBP	2.07	□□□□□ -2.08
PUM1-208	ENST00000471894	PHGR1	C9JFL3	82 aa		1.82	□□□□□ -2.12
PUM1-208	ENST00000471894	MUC19	Q7Z5P9	8384 aa		1.59	□□□□□ -2.15
PUM1-208	ENST00000471894	KRTAP21-1	Q3LI58	79 aa		1.29	□□□□□ -2.2
PUM1-208	ENST00000471894	MUC16	Q8WXI7	14507 aa		1.2	□□□□□ -2.22

Retrieved 78 of 20,778 RNA–protein pairs in 6.6 ms