RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 KRTAP12-2P59991 146 aa3.76□□□□□ -1.81
SF3A1-206ENST00000471037 KRTAP15-1Q3LI76 137 aa3.75□□□□□ -1.81
SF3A1-206ENST00000471037 K7ERS5 55 aa3.74□□□□□ -1.81
SF3A1-206ENST00000471037 SPRR2DP22532 72 aa3.74□□□□□ -1.81
SF3A1-206ENST00000471037 LCE5AQ5TCM9 118 aa3.72□□□□□ -1.81
SF3A1-206ENST00000471037 CAMK2N1Q7Z7J9 78 aa3.72□□□□□ -1.81
SF3A1-206ENST00000471037 BRK1Q8WUW1 75 aa3.7□□□□□ -1.82
SF3A1-206ENST00000471037 A0A0A0MQY5 61 aa3.68□□□□□ -1.82
SF3A1-206ENST00000471037 KRTAP4-7Q9BYR0 210 aa3.65□□□□□ -1.83
SF3A1-206ENST00000471037 KRTAP4-9Q9BYQ8 210 aa3.64□□□□□ -1.83
SF3A1-206ENST00000471037 KRTAP10-12P60413 245 aa3.61□□□□□ -1.83
SF3A1-206ENST00000471037 KRTAP10-7P60409 375 aaPredicted RBP3.6□□□□□ -1.83
SF3A1-206ENST00000471037 C10orf95Q9H7T3 257 aa3.57□□□□□ -1.84
SF3A1-206ENST00000471037 KRTAP4-11Q9BYQ6 195 aa3.56□□□□□ -1.84
SF3A1-206ENST00000471037 PRO0628Q9UI54 55 aa3.56□□□□□ -1.84
SF3A1-206ENST00000471037 TNP1P09430 55 aa3.53□□□□□ -1.84
SF3A1-206ENST00000471037 ROMO1P60602 79 aa3.53□□□□□ -1.84
SF3A1-206ENST00000471037 GPR98Q8WXG9 6306 aa3.52□□□□□ -1.85
SF3A1-206ENST00000471037 PMAIP1Q13794 54 aa3.5□□□□□ -1.85
SF3A1-206ENST00000471037 KRTAP25-1Q3LHN0 102 aa3.5□□□□□ -1.85
SF3A1-206ENST00000471037 KRTAP4-2Q9BYR5 136 aa3.49□□□□□ -1.85
SF3A1-206ENST00000471037 DSTQ03001 7570 aaKnown RBP3.45□□□□□ -1.86
SF3A1-206ENST00000471037 KRTAP19-7Q3SYF9 63 aa3.4□□□□□ -1.87
SF3A1-206ENST00000471037 KRTAP19-3Q7Z4W3 81 aa3.39□□□□□ -1.87
SF3A1-206ENST00000471037 MT1EP04732 61 aa3.38□□□□□ -1.87
SF3A1-206ENST00000471037 LCE3AQ5TA76 89 aa3.37□□□□□ -1.87
SF3A1-206ENST00000471037 PP632Q6XCG6 107 aa3.36□□□□□ -1.87
SF3A1-206ENST00000471037 KTN1-AS1Q86SY8 53 aa3.32□□□□□ -1.88
SF3A1-206ENST00000471037 HMCN1Q96RW7 5635 aa3.29□□□□□ -1.88
SF3A1-206ENST00000471037 MT1GP13640 62 aa3.29□□□□□ -1.88
SF3A1-206ENST00000471037 KRTAP19-5Q3LI72 72 aa3.28□□□□□ -1.88
SF3A1-206ENST00000471037 MT4P47944 62 aa3.27□□□□□ -1.89
SF3A1-206ENST00000471037 KRTAP12-3P60328 96 aa3.26□□□□□ -1.89
SF3A1-206ENST00000471037 PRAC1Q96KF2 57 aa3.26□□□□□ -1.89
SF3A1-206ENST00000471037 KRTAP5-10Q6L8G5 202 aa3.24□□□□□ -1.89
SF3A1-206ENST00000471037 AHNAK2Q8IVF2 5795 aa3.23□□□□□ -1.89
SF3A1-206ENST00000471037 MT1MQ8N339 61 aa3.23□□□□□ -1.89
SF3A1-206ENST00000471037 KRTAP5-4Q6L8H1 288 aa3.22□□□□□ -1.89
SF3A1-206ENST00000471037 MT1LQ93083 61 aa3.19□□□□□ -1.9
SF3A1-206ENST00000471037 KRTAP5-7Q6L8G8 165 aa3.15□□□□□ -1.91
SF3A1-206ENST00000471037 KRTAP4-3Q9BYR4 195 aa3.14□□□□□ -1.91
SF3A1-206ENST00000471037 KRTAP5-3Q6L8H2 238 aa3.11□□□□□ -1.91
SF3A1-206ENST00000471037 KRTAP20-2Q3LI61 65 aa3.04□□□□□ -1.92
SF3A1-206ENST00000471037 LCE3CQ5T5A8 94 aa3.03□□□□□ -1.92
SF3A1-206ENST00000471037 SPRR5A0A1B0GTR4 108 aa3.02□□□□□ -1.93
SF3A1-206ENST00000471037 KRTAP5-5Q701N2 237 aaPredicted RBP3□□□□□ -1.93
SF3A1-206ENST00000471037 KRTAP12-4P60329 112 aa2.95□□□□□ -1.94
SF3A1-206ENST00000471037 SYNE1Q8NF91 8797 aaKnown RBP2.9□□□□□ -1.94
SF3A1-206ENST00000471037 MT3P25713 68 aa2.9□□□□□ -1.95
SF3A1-206ENST00000471037 NDUFAF8A1L188 74 aa2.84□□□□□ -1.95
SF3A1-206ENST00000471037 KRTAP9-6A8MVA2 160 aa2.83□□□□□ -1.96
SF3A1-206ENST00000471037 KRTAP5-2Q701N4 177 aa2.79□□□□□ -1.96
SF3A1-206ENST00000471037 KRTAP5-8O75690 187 aa2.74□□□□□ -1.97
SF3A1-206ENST00000471037 LUZP6Q538Z0 58 aa2.74□□□□□ -1.97
SF3A1-206ENST00000471037 MUC5ACP98088 5654 aa2.73□□□□□ -1.97
SF3A1-206ENST00000471037 MT1AP04731 61 aa2.72□□□□□ -1.97
SF3A1-206ENST00000471037 AHNAKQ09666 5890 aaKnown RBP2.7□□□□□ -1.98
SF3A1-206ENST00000471037 KRTAP6-1Q3LI64 71 aa2.7□□□□□ -1.98
SF3A1-206ENST00000471037 LCE1FQ5T754 118 aa2.7□□□□□ -1.98
SF3A1-206ENST00000471037 MUC5BQ9HC84 5762 aaPredicted RBP2.7□□□□□ -1.98
SF3A1-206ENST00000471037 KRTAP6-2Q3LI66 62 aa2.62□□□□□ -1.99
SF3A1-206ENST00000471037 OBSCNQ5VST9 7968 aa2.59□□□□□ -2
SF3A1-206ENST00000471037 KRTAP5-1Q6L8H4 278 aa2.53□□□□□ -2
SF3A1-206ENST00000471037 LCE1EQ5T753 118 aa2.49□□□□□ -2.01
SF3A1-206ENST00000471037 KRTAP5-11Q6L8G4 156 aa2.41□□□□□ -2.02
SF3A1-206ENST00000471037 LCE3EQ5T5B0 92 aa2.31□□□□□ -2.04
SF3A1-206ENST00000471037 LCE3DQ9BYE3 92 aa2.25□□□□□ -2.05
SF3A1-206ENST00000471037 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.22□□□□□ -2.05
SF3A1-206ENST00000471037 LCE1BQ5T7P3 118 aa2.19□□□□□ -2.06
SF3A1-206ENST00000471037 LCE1CQ5T751 118 aa2.18□□□□□ -2.06
SF3A1-206ENST00000471037 INE1O15225 51 aa2.12□□□□□ -2.07
SF3A1-206ENST00000471037 PHGR1C9JFL3 82 aa1.88□□□□□ -2.11
SF3A1-206ENST00000471037 KRTAP4-4Q9BYR3 166 aa1.86□□□□□ -2.11
SF3A1-206ENST00000471037 PRM1P04553 51 aa1.82□□□□□ -2.12
SF3A1-206ENST00000471037 KRTAP21-2Q3LI59 83 aa1.8□□□□□ -2.12
SF3A1-206ENST00000471037 MUC19Q7Z5P9 8384 aa1.64□□□□□ -2.15
SF3A1-206ENST00000471037 KRTAP21-1Q3LI58 79 aa1.44□□□□□ -2.18
SF3A1-206ENST00000471037 MUC16Q8WXI7 14507 aa1.13□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 127.1 ms