RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 KRTAP10-10P60014 251 aa2.17□□□□□ -2.06
SF3B1-208ENST00000470268 A0A1B0GU33 70 aa2.15□□□□□ -2.06
SF3B1-208ENST00000470268 CRIPTQ9P021 101 aa2.15□□□□□ -2.06
SF3B1-208ENST00000470268 A0A0D9SG42 100 aa2.13□□□□□ -2.07
SF3B1-208ENST00000470268 KRTAP5-8O75690 187 aa2.13□□□□□ -2.07
SF3B1-208ENST00000470268 LCE3EQ5T5B0 92 aa2.13□□□□□ -2.07
SF3B1-208ENST00000470268 USH2AO75445 5202 aa2.12□□□□□ -2.07
SF3B1-208ENST00000470268 SPINT4Q6UDR6 99 aa2.12□□□□□ -2.07
SF3B1-208ENST00000470268 SPRR2GQ9BYE4 73 aa2.11□□□□□ -2.07
SF3B1-208ENST00000470268 FSIP2Q5CZC0 6907 aa2.11□□□□□ -2.07
SF3B1-208ENST00000470268 KRTAP12-2P59991 146 aa2.1□□□□□ -2.07
SF3B1-208ENST00000470268 M0QZ58 72 aa2.08□□□□□ -2.08
SF3B1-208ENST00000470268 R4GN34 69 aa2.08□□□□□ -2.08
SF3B1-208ENST00000470268 MT1BP07438 61 aa2.07□□□□□ -2.08
SF3B1-208ENST00000470268 KRTAP19-8Q3LI54 63 aa2.07□□□□□ -2.08
SF3B1-208ENST00000470268 SSPOA2VEC9 5147 aa2.06□□□□□ -2.08
SF3B1-208ENST00000470268 PRO2289Q9P1D8 64 aa2.05□□□□□ -2.08
SF3B1-208ENST00000470268 C10orf95Q9H7T3 257 aa2.05□□□□□ -2.08
SF3B1-208ENST00000470268 KRTAP12-1P59990 96 aa2.04□□□□□ -2.08
SF3B1-208ENST00000470268 KRTAP5-5Q701N2 237 aaPredicted RBP2.01□□□□□ -2.09
SF3B1-208ENST00000470268 CRCT1Q9UGL9 99 aa2□□□□□ -2.09
SF3B1-208ENST00000470268 KRTAP19-6Q3LI70 58 aa1.99□□□□□ -2.09
SF3B1-208ENST00000470268 FCGBPQ9Y6R7 5405 aaPredicted RBP1.98□□□□□ -2.09
SF3B1-208ENST00000470268 PLAC4Q8WY50 150 aa1.98□□□□□ -2.09
SF3B1-208ENST00000470268 MT1XP80297 61 aa1.97□□□□□ -2.09
SF3B1-208ENST00000470268 LCE1CQ5T751 118 aa1.96□□□□□ -2.1
SF3B1-208ENST00000470268 LCE1BQ5T7P3 118 aa1.96□□□□□ -2.1
SF3B1-208ENST00000470268 MUC5BQ9HC84 5762 aaPredicted RBP1.94□□□□□ -2.1
SF3B1-208ENST00000470268 KMT2DO14686 5537 aa1.9□□□□□ -2.1
SF3B1-208ENST00000470268 MACF1Q9UPN3 7388 aaKnown RBP1.9□□□□□ -2.11
SF3B1-208ENST00000470268 INE1O15225 51 aa1.9□□□□□ -2.11
SF3B1-208ENST00000470268 SPRR5A0A1B0GTR4 108 aa1.87□□□□□ -2.11
SF3B1-208ENST00000470268 SYNE2Q8WXH0 6885 aaKnown RBP1.85□□□□□ -2.11
SF3B1-208ENST00000470268 TNP1P09430 55 aa1.81□□□□□ -2.12
SF3B1-208ENST00000470268 LCE3DQ9BYE3 92 aa1.8□□□□□ -2.12
SF3B1-208ENST00000470268 KRTAP8-1Q8IUC2 63 aa1.79□□□□□ -2.12
SF3B1-208ENST00000470268 MUC12Q9UKN1 5478 aa1.79□□□□□ -2.12
SF3B1-208ENST00000470268 PP632Q6XCG6 107 aa1.78□□□□□ -2.12
SF3B1-208ENST00000470268 KRTAP6-3Q3LI67 103 aa1.78□□□□□ -2.13
SF3B1-208ENST00000470268 KRTAP19-7Q3SYF9 63 aa1.77□□□□□ -2.13
SF3B1-208ENST00000470268 MDN1Q9NU22 5596 aa1.76□□□□□ -2.13
SF3B1-208ENST00000470268 SPRR2FQ96RM1 72 aa1.76□□□□□ -2.13
SF3B1-208ENST00000470268 KRTAP19-5Q3LI72 72 aa1.75□□□□□ -2.13
SF3B1-208ENST00000470268 MT1EP04732 61 aa1.73□□□□□ -2.13
SF3B1-208ENST00000470268 KRTAP12-3P60328 96 aa1.71□□□□□ -2.14
SF3B1-208ENST00000470268 NEBP20929 6669 aa1.68□□□□□ -2.14
SF3B1-208ENST00000470268 SPRR2EP22531 72 aa1.68□□□□□ -2.14
SF3B1-208ENST00000470268 SPRR2BP35325 72 aa1.68□□□□□ -2.14
SF3B1-208ENST00000470268 SPRR2AP35326 72 aa1.68□□□□□ -2.14
SF3B1-208ENST00000470268 MT1LQ93083 61 aa1.68□□□□□ -2.14
SF3B1-208ENST00000470268 KRTAP19-3Q7Z4W3 81 aa1.67□□□□□ -2.14
SF3B1-208ENST00000470268 DSTQ03001 7570 aaKnown RBP1.65□□□□□ -2.15
SF3B1-208ENST00000470268 MT1GP13640 62 aa1.64□□□□□ -2.15
SF3B1-208ENST00000470268 MT1MQ8N339 61 aa1.64□□□□□ -2.15
SF3B1-208ENST00000470268 SPRR2DP22532 72 aa1.62□□□□□ -2.15
SF3B1-208ENST00000470268 GPR98Q8WXG9 6306 aa1.6□□□□□ -2.15
SF3B1-208ENST00000470268 MUC19Q7Z5P9 8384 aa1.58□□□□□ -2.16
SF3B1-208ENST00000470268 KRTAP20-1Q3LI63 56 aa1.57□□□□□ -2.16
SF3B1-208ENST00000470268 KRTAP2-3P0C7H8 128 aa1.56□□□□□ -2.16
SF3B1-208ENST00000470268 KRTAP5-7Q6L8G8 165 aa1.56□□□□□ -2.16
SF3B1-208ENST00000470268 KRTAP2-4Q9BYR9 128 aa1.56□□□□□ -2.16
SF3B1-208ENST00000470268 KRTAP2-1Q9BYU5 128 aa1.53□□□□□ -2.16
SF3B1-208ENST00000470268 SYNE1Q8NF91 8797 aaKnown RBP1.44□□□□□ -2.18
SF3B1-208ENST00000470268 MT4P47944 62 aa1.43□□□□□ -2.18
SF3B1-208ENST00000470268 MT1AP04731 61 aa1.42□□□□□ -2.18
SF3B1-208ENST00000470268 KRTAP6-1Q3LI64 71 aa1.42□□□□□ -2.18
SF3B1-208ENST00000470268 AHNAKQ09666 5890 aaKnown RBP1.4□□□□□ -2.19
SF3B1-208ENST00000470268 KRTAP21-2Q3LI59 83 aa1.39□□□□□ -2.19
SF3B1-208ENST00000470268 KRTAP12-4P60329 112 aa1.37□□□□□ -2.19
SF3B1-208ENST00000470268 KRTAP20-2Q3LI61 65 aa1.37□□□□□ -2.19
SF3B1-208ENST00000470268 KRTAP6-2Q3LI66 62 aa1.32□□□□□ -2.2
SF3B1-208ENST00000470268 AHNAK2Q8IVF2 5795 aa1.27□□□□□ -2.21
SF3B1-208ENST00000470268 KRTAP5-10Q6L8G5 202 aa1.25□□□□□ -2.21
SF3B1-208ENST00000470268 PRM1P04553 51 aa1.14□□□□□ -2.23
SF3B1-208ENST00000470268 MUC5ACP98088 5654 aa1.09□□□□□ -2.24
SF3B1-208ENST00000470268 PHGR1C9JFL3 82 aa0.82□□□□□ -2.28
SF3B1-208ENST00000470268 KRTAP21-1Q3LI58 79 aa0.75□□□□□ -2.29
SF3B1-208ENST00000470268 MUC16Q8WXI7 14507 aa0.73□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 5.7 ms