RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 FAT3Q8TDW7 4589 aa1.97□□□□□ -2.09
COL3A1-205ENST00000470167 KRTAP6-3Q3LI67 103 aa1.97□□□□□ -2.09
COL3A1-205ENST00000470167 KRTAP4-3Q9BYR4 195 aa1.96□□□□□ -2.1
COL3A1-205ENST00000470167 PKD1P98161 4303 aa1.95□□□□□ -2.1
COL3A1-205ENST00000470167 VPS13BQ7Z7G8 4022 aa1.94□□□□□ -2.1
COL3A1-205ENST00000470167 LRP1BQ9NZR2 4599 aa1.93□□□□□ -2.1
COL3A1-205ENST00000470167 DNAH2Q9P225 4427 aa1.92□□□□□ -2.1
COL3A1-205ENST00000470167 USH2AO75445 5202 aa1.92□□□□□ -2.1
COL3A1-205ENST00000470167 C9orf92A6NGG3 77 aa1.92□□□□□ -2.1
COL3A1-205ENST00000470167 FCGBPQ9Y6R7 5405 aaPredicted RBP1.92□□□□□ -2.1
COL3A1-205ENST00000470167 AHNAK2Q8IVF2 5795 aa1.91□□□□□ -2.1
COL3A1-205ENST00000470167 DNAH17Q9UFH2 4485 aa1.91□□□□□ -2.1
COL3A1-205ENST00000470167 KMT2DO14686 5537 aa1.9□□□□□ -2.11
COL3A1-205ENST00000470167 KRTAP12-4P60329 112 aa1.9□□□□□ -2.11
COL3A1-205ENST00000470167 LCE3DQ9BYE3 92 aa1.89□□□□□ -2.11
COL3A1-205ENST00000470167 LRP1Q07954 4544 aaKnown RBP1.88□□□□□ -2.11
COL3A1-205ENST00000470167 DNAH5Q8TE73 4624 aa1.87□□□□□ -2.11
COL3A1-205ENST00000470167 KRTAP2-3P0C7H8 128 aa1.87□□□□□ -2.11
COL3A1-205ENST00000470167 KRTAP2-4Q9BYR9 128 aa1.87□□□□□ -2.11
COL3A1-205ENST00000470167 KRTAP2-1Q9BYU5 128 aa1.87□□□□□ -2.11
COL3A1-205ENST00000470167 MUC12Q9UKN1 5478 aa1.83□□□□□ -2.12
COL3A1-205ENST00000470167 KRTAP8-1Q8IUC2 63 aa1.83□□□□□ -2.12
COL3A1-205ENST00000470167 LCE3AQ5TA76 89 aa1.82□□□□□ -2.12
COL3A1-205ENST00000470167 KRTAP5-8O75690 187 aa1.81□□□□□ -2.12
COL3A1-205ENST00000470167 AHNAKQ09666 5890 aaKnown RBP1.79□□□□□ -2.12
COL3A1-205ENST00000470167 TNXBP22105 4242 aa1.78□□□□□ -2.12
COL3A1-205ENST00000470167 M0R2T5 61 aa1.76□□□□□ -2.13
COL3A1-205ENST00000470167 FLGP20930 4061 aaPredicted RBP1.76□□□□□ -2.13
COL3A1-205ENST00000470167 KRTAP10-4P60372 401 aaPredicted RBP1.75□□□□□ -2.13
COL3A1-205ENST00000470167 DSTQ03001 7570 aaKnown RBP1.74□□□□□ -2.13
COL3A1-205ENST00000470167 SMR3BP02814 79 aaPredicted RBP1.73□□□□□ -2.13
COL3A1-205ENST00000470167 MUC5BQ9HC84 5762 aaPredicted RBP1.73□□□□□ -2.13
COL3A1-205ENST00000470167 MDN1Q9NU22 5596 aa1.72□□□□□ -2.13
COL3A1-205ENST00000470167 KRTAP5-7Q6L8G8 165 aa1.69□□□□□ -2.14
COL3A1-205ENST00000470167 LPAP08519 4548 aa1.68□□□□□ -2.14
COL3A1-205ENST00000470167 KRTAP12-3P60328 96 aa1.67□□□□□ -2.14
COL3A1-205ENST00000470167 KRTAP5-10Q6L8G5 202 aa1.67□□□□□ -2.14
COL3A1-205ENST00000470167 KRTAP5-5Q701N2 237 aaPredicted RBP1.66□□□□□ -2.14
COL3A1-205ENST00000470167 HMCN1Q96RW7 5635 aa1.65□□□□□ -2.15
COL3A1-205ENST00000470167 MT1HL1P0DM35 61 aa1.61□□□□□ -2.15
COL3A1-205ENST00000470167 KRTAP19-5Q3LI72 72 aa1.57□□□□□ -2.16
COL3A1-205ENST00000470167 MUC17Q685J3 4493 aa1.56□□□□□ -2.16
COL3A1-205ENST00000470167 MUC5ACP98088 5654 aa1.55□□□□□ -2.16
COL3A1-205ENST00000470167 PRM1P04553 51 aa1.54□□□□□ -2.16
COL3A1-205ENST00000470167 LCE1CQ5T751 118 aa1.52□□□□□ -2.17
COL3A1-205ENST00000470167 LCE1BQ5T7P3 118 aa1.52□□□□□ -2.17
COL3A1-205ENST00000470167 SPRR2GQ9BYE4 73 aa1.46□□□□□ -2.18
COL3A1-205ENST00000470167 KRTAP19-6Q3LI70 58 aa1.45□□□□□ -2.18
COL3A1-205ENST00000470167 MT1AP04731 61 aa1.44□□□□□ -2.18
COL3A1-205ENST00000470167 SPRR2EP22531 72 aa1.42□□□□□ -2.18
COL3A1-205ENST00000470167 SPRR2BP35325 72 aa1.42□□□□□ -2.18
COL3A1-205ENST00000470167 SPRR2AP35326 72 aa1.42□□□□□ -2.18
COL3A1-205ENST00000470167 MT1HP80294 61 aa1.41□□□□□ -2.18
COL3A1-205ENST00000470167 KRTAP4-1Q9BYQ7 146 aa1.41□□□□□ -2.18
COL3A1-205ENST00000470167 SPRR2DP22532 72 aa1.38□□□□□ -2.19
COL3A1-205ENST00000470167 KRTAP19-2Q3LHN2 52 aa1.37□□□□□ -2.19
COL3A1-205ENST00000470167 MT1XP80297 61 aa1.33□□□□□ -2.2
COL3A1-205ENST00000470167 KRTAP19-8Q3LI54 63 aa1.32□□□□□ -2.2
COL3A1-205ENST00000470167 SYNE1Q8NF91 8797 aaKnown RBP1.31□□□□□ -2.2
COL3A1-205ENST00000470167 MT1EP04732 61 aa1.31□□□□□ -2.2
COL3A1-205ENST00000470167 KRTAP6-2Q3LI66 62 aa1.31□□□□□ -2.2
COL3A1-205ENST00000470167 MT4P47944 62 aa1.29□□□□□ -2.2
COL3A1-205ENST00000470167 MT1LQ93083 61 aa1.27□□□□□ -2.21
COL3A1-205ENST00000470167 SPRR2FQ96RM1 72 aa1.27□□□□□ -2.21
COL3A1-205ENST00000470167 MT1FP04733 61 aa1.24□□□□□ -2.21
COL3A1-205ENST00000470167 MT2AP02795 61 aa1.23□□□□□ -2.21
COL3A1-205ENST00000470167 KRTAP19-3Q7Z4W3 81 aa1.23□□□□□ -2.21
COL3A1-205ENST00000470167 MUC19Q7Z5P9 8384 aa1.22□□□□□ -2.21
COL3A1-205ENST00000470167 MT1BP07438 61 aa1.2□□□□□ -2.22
COL3A1-205ENST00000470167 KRTAP19-7Q3SYF9 63 aa1.18□□□□□ -2.22
COL3A1-205ENST00000470167 KRTAP21-1Q3LI58 79 aa1.15□□□□□ -2.23
COL3A1-205ENST00000470167 KRTAP21-2Q3LI59 83 aa1.1□□□□□ -2.23
COL3A1-205ENST00000470167 MT1GP13640 62 aa1.07□□□□□ -2.24
COL3A1-205ENST00000470167 PHGR1C9JFL3 82 aa1.03□□□□□ -2.24
COL3A1-205ENST00000470167 KRTAP20-2Q3LI61 65 aa0.99□□□□□ -2.25
COL3A1-205ENST00000470167 MT1MQ8N339 61 aa0.99□□□□□ -2.25
COL3A1-205ENST00000470167 KRTAP6-1Q3LI64 71 aa0.98□□□□□ -2.25
COL3A1-205ENST00000470167 MUC16Q8WXI7 14507 aa0.64□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 74.7 ms