RNA–Protein interactions for RNA: ENST00000468723.1

GPNMB-207, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 808 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-207ENST00000468723 ETDBQ3ZM63 59 aa1.3□□□□□ -2.2
GPNMB-207ENST00000468723 COL5A1-AS1Q5SY13 56 aa1.3□□□□□ -2.2
GPNMB-207ENST00000468723 NEBP20929 6669 aa1.3□□□□□ -2.2
GPNMB-207ENST00000468723 KMT2DO14686 5537 aa1.29□□□□□ -2.2
GPNMB-207ENST00000468723 Q5VV11 94 aa1.29□□□□□ -2.2
GPNMB-207ENST00000468723 H0Y9P7 68 aa1.28□□□□□ -2.2
GPNMB-207ENST00000468723 GTF2H5Q6ZYL4 71 aa1.28□□□□□ -2.2
GPNMB-207ENST00000468723 CYP4F30PQ9H0H9 118 aa1.28□□□□□ -2.2
GPNMB-207ENST00000468723 LOC101927531A0A1B0GV80 90 aa1.27□□□□□ -2.21
GPNMB-207ENST00000468723 KLKP1Q107X0 134 aa1.27□□□□□ -2.21
GPNMB-207ENST00000468723 LINC00208Q96KT6 92 aa1.26□□□□□ -2.21
GPNMB-207ENST00000468723 TP53AIP1Q9HCN2 124 aa1.26□□□□□ -2.21
GPNMB-207ENST00000468723 TRAV22A0A0B4J277 110 aa1.25□□□□□ -2.21
GPNMB-207ENST00000468723 KRTAP19-8Q3LI54 63 aa1.25□□□□□ -2.21
GPNMB-207ENST00000468723 CCDC179H3BU77 68 aa1.24□□□□□ -2.21
GPNMB-207ENST00000468723 NDUFC1O43677 76 aa1.24□□□□□ -2.21
GPNMB-207ENST00000468723 SPRR2GQ9BYE4 73 aa1.24□□□□□ -2.21
GPNMB-207ENST00000468723 ACYP1P07311 99 aa1.23□□□□□ -2.21
GPNMB-207ENST00000468723 KRTAP20-1Q3LI63 56 aa1.23□□□□□ -2.21
GPNMB-207ENST00000468723 MDN1Q9NU22 5596 aa1.22□□□□□ -2.21
GPNMB-207ENST00000468723 M0QZ58 72 aa1.22□□□□□ -2.21
GPNMB-207ENST00000468723 SPRR2EP22531 72 aa1.22□□□□□ -2.21
GPNMB-207ENST00000468723 SPRR2BP35325 72 aa1.22□□□□□ -2.21
GPNMB-207ENST00000468723 SPRR2AP35326 72 aa1.22□□□□□ -2.21
GPNMB-207ENST00000468723 PLAC4Q8WY50 150 aa1.22□□□□□ -2.21
GPNMB-207ENST00000468723 SPRR2FQ96RM1 72 aa1.22□□□□□ -2.21
GPNMB-207ENST00000468723 MT1XP80297 61 aa1.21□□□□□ -2.22
GPNMB-207ENST00000468723 ATOX1O00244 68 aa1.2□□□□□ -2.22
GPNMB-207ENST00000468723 ATP5EP2Q5VTU8 51 aa1.2□□□□□ -2.22
GPNMB-207ENST00000468723 LINC00643Q86TS7 51 aa1.2□□□□□ -2.22
GPNMB-207ENST00000468723 KRTAP8-1Q8IUC2 63 aa1.2□□□□□ -2.22
GPNMB-207ENST00000468723 CRIPTQ9P021 101 aa1.19□□□□□ -2.22
GPNMB-207ENST00000468723 MT-ATP8P03928 68 aa1.18□□□□□ -2.22
GPNMB-207ENST00000468723 SERP1Q9Y6X1 66 aa1.18□□□□□ -2.22
GPNMB-207ENST00000468723 KRTAP2-3P0C7H8 128 aa1.17□□□□□ -2.22
GPNMB-207ENST00000468723 SPRR2DP22532 72 aa1.17□□□□□ -2.22
GPNMB-207ENST00000468723 SPTSSBQ8NFR3 76 aa1.17□□□□□ -2.22
GPNMB-207ENST00000468723 KRTAP2-4Q9BYR9 128 aa1.17□□□□□ -2.22
GPNMB-207ENST00000468723 H0YAA0 97 aa1.16□□□□□ -2.22
GPNMB-207ENST00000468723 CHKB-CPT1BH3BT56 60 aa1.16□□□□□ -2.22
GPNMB-207ENST00000468723 A0A0D9SG42 100 aa1.15□□□□□ -2.23
GPNMB-207ENST00000468723 ACYP2P14621 99 aa1.15□□□□□ -2.23
GPNMB-207ENST00000468723 C20orf197Q8N268 126 aa1.15□□□□□ -2.23
GPNMB-207ENST00000468723 SPATA8Q6RVD6 105 aa1.13□□□□□ -2.23
GPNMB-207ENST00000468723 KRTAP2-1Q9BYU5 128 aa1.13□□□□□ -2.23
GPNMB-207ENST00000468723 KRTAP19-5Q3LI72 72 aa1.08□□□□□ -2.24
GPNMB-207ENST00000468723 SERP2Q8N6R1 65 aa1.08□□□□□ -2.24
GPNMB-207ENST00000468723 MT1EP04732 61 aa1.07□□□□□ -2.24
GPNMB-207ENST00000468723 KRTAP19-7Q3SYF9 63 aa1.07□□□□□ -2.24
GPNMB-207ENST00000468723 GPR98Q8WXG9 6306 aa1.07□□□□□ -2.24
GPNMB-207ENST00000468723 MT4P47944 62 aa1.06□□□□□ -2.24
GPNMB-207ENST00000468723 DSTQ03001 7570 aaKnown RBP1.05□□□□□ -2.24
GPNMB-207ENST00000468723 KRTAP19-3Q7Z4W3 81 aa1.05□□□□□ -2.24
GPNMB-207ENST00000468723 C10orf95Q9H7T3 257 aa1.04□□□□□ -2.24
GPNMB-207ENST00000468723 A0A1B0GU69 56 aa1.03□□□□□ -2.24
GPNMB-207ENST00000468723 H7BZZ5 65 aa1.03□□□□□ -2.24
GPNMB-207ENST00000468723 MT1MQ8N339 61 aa1.03□□□□□ -2.24
GPNMB-207ENST00000468723 AHNAK2Q8IVF2 5795 aa1.02□□□□□ -2.25
GPNMB-207ENST00000468723 MT1LQ93083 61 aa1.02□□□□□ -2.25
GPNMB-207ENST00000468723 MT1GP13640 62 aa1.01□□□□□ -2.25
GPNMB-207ENST00000468723 TNP1P09430 55 aa1□□□□□ -2.25
GPNMB-207ENST00000468723 SYNE1Q8NF91 8797 aaKnown RBP0.98□□□□□ -2.25
GPNMB-207ENST00000468723 PRR15LQ9BU68 103 aa0.98□□□□□ -2.25
GPNMB-207ENST00000468723 ATP5EP56381 51 aaPredicted RBP0.97□□□□□ -2.25
GPNMB-207ENST00000468723 LINC01558Q9Y6Z2 57 aa0.96□□□□□ -2.26
GPNMB-207ENST00000468723 UQCR11O14957 56 aa0.94□□□□□ -2.26
GPNMB-207ENST00000468723 KRTAP5-10Q6L8G5 202 aa0.94□□□□□ -2.26
GPNMB-207ENST00000468723 KRTAP20-2Q3LI61 65 aa0.93□□□□□ -2.26
GPNMB-207ENST00000468723 MUC16Q8WXI7 14507 aa0.91□□□□□ -2.26
GPNMB-207ENST00000468723 KRTAP6-1Q3LI64 71 aa0.89□□□□□ -2.27
GPNMB-207ENST00000468723 MT1AP04731 61 aa0.86□□□□□ -2.27
GPNMB-207ENST00000468723 KRTAP6-2Q3LI66 62 aa0.85□□□□□ -2.27
GPNMB-207ENST00000468723 AHNAKQ09666 5890 aaKnown RBP0.84□□□□□ -2.27
GPNMB-207ENST00000468723 MUC5BQ9HC84 5762 aaPredicted RBP0.84□□□□□ -2.27
GPNMB-207ENST00000468723 MUC5ACP98088 5654 aa0.8□□□□□ -2.28
GPNMB-207ENST00000468723 PHGR1C9JFL3 82 aa0.58□□□□□ -2.32
GPNMB-207ENST00000468723 KRTAP21-1Q3LI58 79 aa0.54□□□□□ -2.32
GPNMB-207ENST00000468723 PRM1P04553 51 aa0.47□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 56 ms