RNA–Protein interactions for RNA: ENST00000467663.5

CTNS-205, Transcript of cystinosin, lysosomal cystine transporter, human

TSL 3

Gene CTNS, Length 590 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNS-205	ENST00000467663	KTN1-AS1	Q86SY8	53 aa		4.81	□□□□□ -1.64
CTNS-205	ENST00000467663	KRTAP2-4	Q9BYR9	128 aa		4.81	□□□□□ -1.64
CTNS-205	ENST00000467663	KRTAP23-1	A1A580	65 aa		4.79	□□□□□ -1.64
CTNS-205	ENST00000467663	LCE1A	Q5T7P2	110 aa		4.78	□□□□□ -1.64
CTNS-205	ENST00000467663	KRTAP10-7	P60409	375 aa	Predicted RBP	4.77	□□□□□ -1.65
CTNS-205	ENST00000467663	KRTAP10-12	P60413	245 aa		4.76	□□□□□ -1.65
CTNS-205	ENST00000467663		H3BS24	57 aa		4.75	□□□□□ -1.65
CTNS-205	ENST00000467663	PP632	Q6XCG6	107 aa		4.75	□□□□□ -1.65
CTNS-205	ENST00000467663	LCE1D	Q5T752	114 aa		4.74	□□□□□ -1.65
CTNS-205	ENST00000467663	KRTAP4-7	Q9BYR0	210 aa		4.71	□□□□□ -1.66
CTNS-205	ENST00000467663	SPRR2D	P22532	72 aa		4.66	□□□□□ -1.66
CTNS-205	ENST00000467663	KRTAP2-2	Q9BYT5	123 aa		4.66	□□□□□ -1.66
CTNS-205	ENST00000467663	KRTAP2-1	Q9BYU5	128 aa		4.66	□□□□□ -1.66
CTNS-205	ENST00000467663	PRAC1	Q96KF2	57 aa		4.61	□□□□□ -1.67
CTNS-205	ENST00000467663	KRTAP4-9	Q9BYQ8	210 aa		4.59	□□□□□ -1.67
CTNS-205	ENST00000467663	LCE3A	Q5TA76	89 aa		4.58	□□□□□ -1.68
CTNS-205	ENST00000467663	KRTAP19-4	Q3LI73	84 aa		4.56	□□□□□ -1.68
CTNS-205	ENST00000467663	LCE4A	Q5TA78	99 aa		4.49	□□□□□ -1.69
CTNS-205	ENST00000467663	KRTAP19-7	Q3SYF9	63 aa		4.48	□□□□□ -1.69
CTNS-205	ENST00000467663	SVIP	Q8NHG7	77 aa		4.48	□□□□□ -1.69
CTNS-205	ENST00000467663	KRTAP4-2	Q9BYR5	136 aa		4.48	□□□□□ -1.69
CTNS-205	ENST00000467663	KRTAP12-3	P60328	96 aa		4.46	□□□□□ -1.7
CTNS-205	ENST00000467663	MT1E	P04732	61 aa		4.44	□□□□□ -1.7
CTNS-205	ENST00000467663	LCE5A	Q5TCM9	118 aa		4.43	□□□□□ -1.7
CTNS-205	ENST00000467663	KRTAP19-5	Q3LI72	72 aa		4.42	□□□□□ -1.7
CTNS-205	ENST00000467663	KRTAP4-11	Q9BYQ6	195 aa		4.42	□□□□□ -1.7
CTNS-205	ENST00000467663	KRTAP19-3	Q7Z4W3	81 aa		4.41	□□□□□ -1.7
CTNS-205	ENST00000467663	KRTAP15-1	Q3LI76	137 aa		4.37	□□□□□ -1.71
CTNS-205	ENST00000467663	MT1G	P13640	62 aa		4.31	□□□□□ -1.72
CTNS-205	ENST00000467663	DST	Q03001	7570 aa	Known RBP	4.29	□□□□□ -1.72
CTNS-205	ENST00000467663	MT1L	Q93083	61 aa		4.24	□□□□□ -1.73
CTNS-205	ENST00000467663	MT1M	Q8N339	61 aa		4.22	□□□□□ -1.73
CTNS-205	ENST00000467663	LCE3C	Q5T5A8	94 aa		4.16	□□□□□ -1.74
CTNS-205	ENST00000467663	KRTAP4-3	Q9BYR4	195 aa		4.12	□□□□□ -1.75
CTNS-205	ENST00000467663	SPRR5	A0A1B0GTR4	108 aa		4.08	□□□□□ -1.76
CTNS-205	ENST00000467663	MT4	P47944	62 aa		4.07	□□□□□ -1.76
CTNS-205	ENST00000467663	KRTAP5-4	Q6L8H1	288 aa		4.07	□□□□□ -1.76
CTNS-205	ENST00000467663	GPR98	Q8WXG9	6306 aa		4.04	□□□□□ -1.76
CTNS-205	ENST00000467663	HMCN1	Q96RW7	5635 aa		4.02	□□□□□ -1.77
CTNS-205	ENST00000467663	KRTAP5-3	Q6L8H2	238 aa		4.02	□□□□□ -1.77
CTNS-205	ENST00000467663	LUZP6	Q538Z0	58 aa		3.95	□□□□□ -1.78
CTNS-205	ENST00000467663	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.89	□□□□□ -1.79
CTNS-205	ENST00000467663	KRTAP5-10	Q6L8G5	202 aa		3.87	□□□□□ -1.79
CTNS-205	ENST00000467663	AHNAK2	Q8IVF2	5795 aa		3.86	□□□□□ -1.79
CTNS-205	ENST00000467663	KRTAP9-6	A8MVA2	160 aa		3.83	□□□□□ -1.8
CTNS-205	ENST00000467663	KRTAP20-2	Q3LI61	65 aa		3.83	□□□□□ -1.8
CTNS-205	ENST00000467663	KRTAP12-4	P60329	112 aa		3.78	□□□□□ -1.8
CTNS-205	ENST00000467663	KRTAP5-7	Q6L8G8	165 aa		3.73	□□□□□ -1.81
CTNS-205	ENST00000467663	SYNE1	Q8NF91	8797 aa	Known RBP	3.68	□□□□□ -1.82
CTNS-205	ENST00000467663	NDUFAF8	A1L188	74 aa		3.65	□□□□□ -1.83
CTNS-205	ENST00000467663	MT1A	P04731	61 aa		3.65	□□□□□ -1.83
CTNS-205	ENST00000467663	KRTAP6-1	Q3LI64	71 aa		3.58	□□□□□ -1.84
CTNS-205	ENST00000467663	KRTAP5-2	Q701N4	177 aa		3.55	□□□□□ -1.84
CTNS-205	ENST00000467663	KRTAP6-2	Q3LI66	62 aa		3.42	□□□□□ -1.86
CTNS-205	ENST00000467663	KRTAP5-8	O75690	187 aa		3.4	□□□□□ -1.87
CTNS-205	ENST00000467663	MT3	P25713	68 aa		3.34	□□□□□ -1.87
CTNS-205	ENST00000467663		A0A0A0MQY5	61 aa		3.31	□□□□□ -1.88
CTNS-205	ENST00000467663	OBSCN	Q5VST9	7968 aa		3.24	□□□□□ -1.89
CTNS-205	ENST00000467663	MUC5AC	P98088	5654 aa		3.2	□□□□□ -1.9
CTNS-205	ENST00000467663	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.2	□□□□□ -1.9
CTNS-205	ENST00000467663	KRTAP5-1	Q6L8H4	278 aa		3.19	□□□□□ -1.9
CTNS-205	ENST00000467663	AHNAK	Q09666	5890 aa	Known RBP	3.17	□□□□□ -1.9
CTNS-205	ENST00000467663	INE1	O15225	51 aa		3.15	□□□□□ -1.91
CTNS-205	ENST00000467663	LCE3D	Q9BYE3	92 aa		3.12	□□□□□ -1.91
CTNS-205	ENST00000467663	LCE1E	Q5T753	118 aa		3.05	□□□□□ -1.92
CTNS-205	ENST00000467663	LCE3E	Q5T5B0	92 aa		3.04	□□□□□ -1.92
CTNS-205	ENST00000467663	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.02	□□□□□ -1.93
CTNS-205	ENST00000467663	KRTAP5-11	Q6L8G4	156 aa		2.95	□□□□□ -1.94
CTNS-205	ENST00000467663	LCE1B	Q5T7P3	118 aa		2.84	□□□□□ -1.95
CTNS-205	ENST00000467663	LCE1C	Q5T751	118 aa		2.83	□□□□□ -1.96
CTNS-205	ENST00000467663	PRM1	P04553	51 aa		2.53	□□□□□ -2
CTNS-205	ENST00000467663	LCE1F	Q5T754	118 aa		2.52	□□□□□ -2.01
CTNS-205	ENST00000467663	KRTAP4-4	Q9BYR3	166 aa		2.5	□□□□□ -2.01
CTNS-205	ENST00000467663	KRTAP21-2	Q3LI59	83 aa		2.37	□□□□□ -2.03
CTNS-205	ENST00000467663	PHGR1	C9JFL3	82 aa		2.24	□□□□□ -2.05
CTNS-205	ENST00000467663	MUC19	Q7Z5P9	8384 aa		1.98	□□□□□ -2.09
CTNS-205	ENST00000467663	KRTAP21-1	Q3LI58	79 aa		1.71	□□□□□ -2.14
CTNS-205	ENST00000467663	MUC16	Q8WXI7	14507 aa		1.41	□□□□□ -2.18

Retrieved 78 of 20,778 RNA–protein pairs in 81.7 ms