RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 KRTAP2-2Q9BYT5 123 aa4.44□□□□□ -1.7
SHROOM3-202ENST00000466541 KRTAP2-1Q9BYU5 128 aa4.44□□□□□ -1.7
SHROOM3-202ENST00000466541 KRTAP19-3Q7Z4W3 81 aa4.38□□□□□ -1.71
SHROOM3-202ENST00000466541 LCE3BQ5TA77 95 aa4.37□□□□□ -1.71
SHROOM3-202ENST00000466541 LCE5AQ5TCM9 118 aa4.35□□□□□ -1.71
SHROOM3-202ENST00000466541 KRTAP25-1Q3LHN0 102 aa4.33□□□□□ -1.72
SHROOM3-202ENST00000466541 MT1LQ93083 61 aa4.29□□□□□ -1.72
SHROOM3-202ENST00000466541 MT1GP13640 62 aa4.28□□□□□ -1.72
SHROOM3-202ENST00000466541 KRTAP12-3P60328 96 aa4.28□□□□□ -1.72
SHROOM3-202ENST00000466541 PP632Q6XCG6 107 aa4.27□□□□□ -1.73
SHROOM3-202ENST00000466541 CDC42SE1Q9NRR8 79 aa4.27□□□□□ -1.73
SHROOM3-202ENST00000466541 KRTAP19-4Q3LI73 84 aa4.26□□□□□ -1.73
SHROOM3-202ENST00000466541 MT1MQ8N339 61 aa4.24□□□□□ -1.73
SHROOM3-202ENST00000466541 ROMO1P60602 79 aa4.21□□□□□ -1.74
SHROOM3-202ENST00000466541 DSTQ03001 7570 aaKnown RBP4.2□□□□□ -1.74
SHROOM3-202ENST00000466541 KRTAP4-12Q9BQ66 201 aa4.2□□□□□ -1.74
SHROOM3-202ENST00000466541 KRTAP4-3Q9BYR4 195 aa4.18□□□□□ -1.74
SHROOM3-202ENST00000466541 KRTAP4-7Q9BYR0 210 aa4.14□□□□□ -1.75
SHROOM3-202ENST00000466541 KRTAP23-1A1A580 65 aa4.12□□□□□ -1.75
SHROOM3-202ENST00000466541 BRK1Q8WUW1 75 aa4.06□□□□□ -1.76
SHROOM3-202ENST00000466541 KRTAP4-9Q9BYQ8 210 aa4.06□□□□□ -1.76
SHROOM3-202ENST00000466541 KRTAP15-1Q3LI76 137 aa4.05□□□□□ -1.76
SHROOM3-202ENST00000466541 MT4P47944 62 aa3.97□□□□□ -1.77
SHROOM3-202ENST00000466541 LCE3CQ5T5A8 94 aa3.95□□□□□ -1.78
SHROOM3-202ENST00000466541 KRTAP9-9Q9BYP9 154 aa3.95□□□□□ -1.78
SHROOM3-202ENST00000466541 KRTAP9-4Q9BYQ2 154 aa3.95□□□□□ -1.78
SHROOM3-202ENST00000466541 LCE1DQ5T752 114 aa3.94□□□□□ -1.78
SHROOM3-202ENST00000466541 LCE4AQ5TA78 99 aa3.94□□□□□ -1.78
SHROOM3-202ENST00000466541 GPR98Q8WXG9 6306 aa3.91□□□□□ -1.78
SHROOM3-202ENST00000466541 KRTAP5-4Q6L8H1 288 aa3.88□□□□□ -1.79
SHROOM3-202ENST00000466541 HMCN1Q96RW7 5635 aa3.86□□□□□ -1.79
SHROOM3-202ENST00000466541 PMAIP1Q13794 54 aa3.82□□□□□ -1.8
SHROOM3-202ENST00000466541 KRTAP5-5Q701N2 237 aaPredicted RBP3.82□□□□□ -1.8
SHROOM3-202ENST00000466541 KRTAP12-4P60329 112 aa3.74□□□□□ -1.81
SHROOM3-202ENST00000466541 KRTAP9-6A8MVA2 160 aa3.72□□□□□ -1.81
SHROOM3-202ENST00000466541 KRTAP5-10Q6L8G5 202 aa3.71□□□□□ -1.82
SHROOM3-202ENST00000466541 KRTAP20-2Q3LI61 65 aa3.69□□□□□ -1.82
SHROOM3-202ENST00000466541 AHNAK2Q8IVF2 5795 aa3.69□□□□□ -1.82
SHROOM3-202ENST00000466541 PRAC1Q96KF2 57 aa3.67□□□□□ -1.82
SHROOM3-202ENST00000466541 SPRR5A0A1B0GTR4 108 aa3.66□□□□□ -1.82
SHROOM3-202ENST00000466541 KRTAP6-1Q3LI64 71 aa3.64□□□□□ -1.83
SHROOM3-202ENST00000466541 MT1AP04731 61 aa3.63□□□□□ -1.83
SHROOM3-202ENST00000466541 PRO0628Q9UI54 55 aa3.62□□□□□ -1.83
SHROOM3-202ENST00000466541 KRTAP4-11Q9BYQ6 195 aa3.61□□□□□ -1.83
SHROOM3-202ENST00000466541 SYNE1Q8NF91 8797 aaKnown RBP3.59□□□□□ -1.83
SHROOM3-202ENST00000466541 KRTAP5-7Q6L8G8 165 aa3.59□□□□□ -1.83
SHROOM3-202ENST00000466541 KRTAP5-3Q6L8H2 238 aa3.59□□□□□ -1.83
SHROOM3-202ENST00000466541 KRTAP4-2Q9BYR5 136 aa3.55□□□□□ -1.84
SHROOM3-202ENST00000466541 KRTAP6-2Q3LI66 62 aa3.46□□□□□ -1.86
SHROOM3-202ENST00000466541 KTN1-AS1Q86SY8 53 aa3.44□□□□□ -1.86
SHROOM3-202ENST00000466541 KRTAP5-2Q701N4 177 aa3.43□□□□□ -1.86
SHROOM3-202ENST00000466541 SVIPQ8NHG7 77 aa3.42□□□□□ -1.86
SHROOM3-202ENST00000466541 MT3P25713 68 aa3.33□□□□□ -1.88
SHROOM3-202ENST00000466541 KRTAP5-8O75690 187 aa3.2□□□□□ -1.9
SHROOM3-202ENST00000466541 OBSCNQ5VST9 7968 aa3.19□□□□□ -1.9
SHROOM3-202ENST00000466541 LUZP6Q538Z0 58 aa3.06□□□□□ -1.92
SHROOM3-202ENST00000466541 KRTAP5-1Q6L8H4 278 aa3.06□□□□□ -1.92
SHROOM3-202ENST00000466541 MUC5BQ9HC84 5762 aaPredicted RBP3.05□□□□□ -1.92
SHROOM3-202ENST00000466541 A0A0A0MQY5 61 aa3.04□□□□□ -1.92
SHROOM3-202ENST00000466541 MUC5ACP98088 5654 aa3.02□□□□□ -1.93
SHROOM3-202ENST00000466541 AHNAKQ09666 5890 aaKnown RBP2.99□□□□□ -1.93
SHROOM3-202ENST00000466541 LCE1EQ5T753 118 aa2.96□□□□□ -1.94
SHROOM3-202ENST00000466541 LCE1BQ5T7P3 118 aa2.9□□□□□ -1.95
SHROOM3-202ENST00000466541 LCE3DQ9BYE3 92 aa2.89□□□□□ -1.95
SHROOM3-202ENST00000466541 LCE1CQ5T751 118 aa2.76□□□□□ -1.97
SHROOM3-202ENST00000466541 LCE3EQ5T5B0 92 aa2.74□□□□□ -1.97
SHROOM3-202ENST00000466541 NDUFAF8A1L188 74 aa2.62□□□□□ -1.99
SHROOM3-202ENST00000466541 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.51□□□□□ -2.01
SHROOM3-202ENST00000466541 KRTAP5-11Q6L8G4 156 aa2.48□□□□□ -2.01
SHROOM3-202ENST00000466541 LCE1FQ5T754 118 aa2.42□□□□□ -2.02
SHROOM3-202ENST00000466541 KRTAP21-2Q3LI59 83 aa2.36□□□□□ -2.03
SHROOM3-202ENST00000466541 KRTAP4-4Q9BYR3 166 aa2.23□□□□□ -2.05
SHROOM3-202ENST00000466541 PRM1P04553 51 aa2.19□□□□□ -2.06
SHROOM3-202ENST00000466541 PHGR1C9JFL3 82 aa2.16□□□□□ -2.06
SHROOM3-202ENST00000466541 INE1O15225 51 aa2.07□□□□□ -2.08
SHROOM3-202ENST00000466541 MUC19Q7Z5P9 8384 aa1.94□□□□□ -2.1
SHROOM3-202ENST00000466541 KRTAP21-1Q3LI58 79 aa1.64□□□□□ -2.15
SHROOM3-202ENST00000466541 MUC16Q8WXI7 14507 aa1.39□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 61.2 ms