RNA–Protein interactions for RNA: ENST00000466489.1

PMF1-204, Transcript of polyamine modulated factor 1, humanhuman

TSL 1 (best)

Gene PMF1, Length 933 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMF1-204ENST00000466489 LCE3AQ5TA76 89 aa3.88□□□□□ -1.79
PMF1-204ENST00000466489 SPRR2FQ96RM1 72 aa3.87□□□□□ -1.79
PMF1-204ENST00000466489 KRTAP2-3P0C7H8 128 aa3.86□□□□□ -1.79
PMF1-204ENST00000466489 KRTAP12-3P60328 96 aa3.86□□□□□ -1.79
PMF1-204ENST00000466489 KRTAP2-4Q9BYR9 128 aa3.86□□□□□ -1.79
PMF1-204ENST00000466489 KRTAP4-8A0A0G2JLE6 195 aa3.84□□□□□ -1.79
PMF1-204ENST00000466489 KRTAP4-8Q9BYQ9 185 aa3.84□□□□□ -1.79
PMF1-204ENST00000466489 KMT2DO14686 5537 aa3.83□□□□□ -1.8
PMF1-204ENST00000466489 MDN1Q9NU22 5596 aa3.79□□□□□ -1.8
PMF1-204ENST00000466489 SPRR2EP22531 72 aa3.76□□□□□ -1.81
PMF1-204ENST00000466489 SPRR2BP35325 72 aa3.76□□□□□ -1.81
PMF1-204ENST00000466489 SPRR2AP35326 72 aa3.76□□□□□ -1.81
PMF1-204ENST00000466489 KRTAP2-2Q9BYT5 123 aa3.72□□□□□ -1.81
PMF1-204ENST00000466489 KRTAP2-1Q9BYU5 128 aa3.72□□□□□ -1.81
PMF1-204ENST00000466489 LCE1AQ5T7P2 110 aa3.69□□□□□ -1.82
PMF1-204ENST00000466489 KRTAP19-7Q3SYF9 63 aa3.66□□□□□ -1.82
PMF1-204ENST00000466489 KRTAP19-5Q3LI72 72 aa3.65□□□□□ -1.83
PMF1-204ENST00000466489 MT1EP04732 61 aa3.64□□□□□ -1.83
PMF1-204ENST00000466489 SPRR2DP22532 72 aa3.64□□□□□ -1.83
PMF1-204ENST00000466489 LCE3CQ5T5A8 94 aa3.64□□□□□ -1.83
PMF1-204ENST00000466489 KRTAP19-3Q7Z4W3 81 aa3.59□□□□□ -1.83
PMF1-204ENST00000466489 GPR98Q8WXG9 6306 aa3.59□□□□□ -1.84
PMF1-204ENST00000466489 MT1GP13640 62 aa3.55□□□□□ -1.84
PMF1-204ENST00000466489 LCE5AQ5TCM9 118 aa3.55□□□□□ -1.84
PMF1-204ENST00000466489 LCE3BQ5TA77 95 aa3.51□□□□□ -1.85
PMF1-204ENST00000466489 MT1LQ93083 61 aa3.51□□□□□ -1.85
PMF1-204ENST00000466489 MT1MQ8N339 61 aa3.46□□□□□ -1.86
PMF1-204ENST00000466489 LOC100996750A0A140TA64 210 aa3.42□□□□□ -1.86
PMF1-204ENST00000466489 KRTAP4-6Q9BYQ5 205 aa3.42□□□□□ -1.86
PMF1-204ENST00000466489 DSTQ03001 7570 aaKnown RBP3.37□□□□□ -1.87
PMF1-204ENST00000466489 KRTAP4-7Q9BYR0 210 aa3.31□□□□□ -1.88
PMF1-204ENST00000466489 KRTAP4-3Q9BYR4 195 aa3.31□□□□□ -1.88
PMF1-204ENST00000466489 KRTAP4-9Q9BYQ8 210 aa3.29□□□□□ -1.88
PMF1-204ENST00000466489 LCE4AQ5TA78 99 aa3.23□□□□□ -1.89
PMF1-204ENST00000466489 KRTAP9-6A8MVA2 160 aa3.2□□□□□ -1.9
PMF1-204ENST00000466489 LCE1DQ5T752 114 aa3.19□□□□□ -1.9
PMF1-204ENST00000466489 KRTAP5-10Q6L8G5 202 aa3.18□□□□□ -1.9
PMF1-204ENST00000466489 KRTAP5-4Q6L8H1 288 aa3.15□□□□□ -1.91
PMF1-204ENST00000466489 HMCN1Q96RW7 5635 aa3.15□□□□□ -1.91
PMF1-204ENST00000466489 MT4P47944 62 aa3.14□□□□□ -1.91
PMF1-204ENST00000466489 KRTAP5-7Q6L8G8 165 aa3.13□□□□□ -1.91
PMF1-204ENST00000466489 KRTAP5-5Q701N2 237 aaPredicted RBP3.12□□□□□ -1.91
PMF1-204ENST00000466489 AHNAK2Q8IVF2 5795 aa3.11□□□□□ -1.91
PMF1-204ENST00000466489 KRTAP12-4P60329 112 aa3.09□□□□□ -1.91
PMF1-204ENST00000466489 MT1AP04731 61 aa3.04□□□□□ -1.92
PMF1-204ENST00000466489 KRTAP5-3Q6L8H2 238 aa3.01□□□□□ -1.93
PMF1-204ENST00000466489 KRTAP4-12Q9BQ66 201 aa3.01□□□□□ -1.93
PMF1-204ENST00000466489 KRTAP20-2Q3LI61 65 aa2.98□□□□□ -1.93
PMF1-204ENST00000466489 KRTAP6-1Q3LI64 71 aa2.95□□□□□ -1.94
PMF1-204ENST00000466489 SYNE1Q8NF91 8797 aaKnown RBP2.92□□□□□ -1.94
PMF1-204ENST00000466489 KRTAP9-9Q9BYP9 154 aa2.9□□□□□ -1.95
PMF1-204ENST00000466489 KRTAP9-4Q9BYQ2 154 aa2.9□□□□□ -1.95
PMF1-204ENST00000466489 LCE3DQ9BYE3 92 aa2.86□□□□□ -1.95
PMF1-204ENST00000466489 LCE3EQ5T5B0 92 aa2.83□□□□□ -1.96
PMF1-204ENST00000466489 KRTAP5-2Q701N4 177 aa2.8□□□□□ -1.96
PMF1-204ENST00000466489 KRTAP6-2Q3LI66 62 aa2.79□□□□□ -1.96
PMF1-204ENST00000466489 MT3P25713 68 aa2.78□□□□□ -1.96
PMF1-204ENST00000466489 AHNAKQ09666 5890 aaKnown RBP2.7□□□□□ -1.98
PMF1-204ENST00000466489 KRTAP4-11Q9BYQ6 195 aa2.69□□□□□ -1.98
PMF1-204ENST00000466489 MUC5ACP98088 5654 aa2.68□□□□□ -1.98
PMF1-204ENST00000466489 KRTAP4-2Q9BYR5 136 aa2.66□□□□□ -1.98
PMF1-204ENST00000466489 MUC5BQ9HC84 5762 aaPredicted RBP2.64□□□□□ -1.99
PMF1-204ENST00000466489 KRTAP5-8O75690 187 aa2.6□□□□□ -1.99
PMF1-204ENST00000466489 PRM1P04553 51 aa2.54□□□□□ -2
PMF1-204ENST00000466489 OBSCNQ5VST9 7968 aa2.51□□□□□ -2.01
PMF1-204ENST00000466489 LCE1EQ5T753 118 aa2.49□□□□□ -2.01
PMF1-204ENST00000466489 KRTAP5-1Q6L8H4 278 aa2.46□□□□□ -2.02
PMF1-204ENST00000466489 LCE1BQ5T7P3 118 aa2.32□□□□□ -2.04
PMF1-204ENST00000466489 LCE1CQ5T751 118 aa2.3□□□□□ -2.04
PMF1-204ENST00000466489 LCE1FQ5T754 118 aa2.13□□□□□ -2.07
PMF1-204ENST00000466489 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.11□□□□□ -2.07
PMF1-204ENST00000466489 KRTAP5-11Q6L8G4 156 aa2.06□□□□□ -2.08
PMF1-204ENST00000466489 KRTAP21-2Q3LI59 83 aa1.93□□□□□ -2.1
PMF1-204ENST00000466489 PHGR1C9JFL3 82 aa1.88□□□□□ -2.11
PMF1-204ENST00000466489 KRTAP4-4Q9BYR3 166 aa1.73□□□□□ -2.13
PMF1-204ENST00000466489 KRTAP21-1Q3LI58 79 aa1.69□□□□□ -2.14
PMF1-204ENST00000466489 MUC19Q7Z5P9 8384 aa1.56□□□□□ -2.16
PMF1-204ENST00000466489 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 80.1 ms