RNA–Protein interactions for RNA: ENST00000466100.1

VCP-204, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 508 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-204ENST00000466100 PRO0628Q9UI54 55 aa4.14□□□□□ -1.75
VCP-204ENST00000466100 MT1EP04732 61 aa4.13□□□□□ -1.75
VCP-204ENST00000466100 NEBP20929 6669 aa4.11□□□□□ -1.75
VCP-204ENST00000466100 PMAIP1Q13794 54 aa4.1□□□□□ -1.75
VCP-204ENST00000466100 LCE1AQ5T7P2 110 aa4.08□□□□□ -1.76
VCP-204ENST00000466100 KRTAP4-9Q9BYQ8 210 aa4.07□□□□□ -1.76
VCP-204ENST00000466100 KRTAP12-3P60328 96 aa4.05□□□□□ -1.76
VCP-204ENST00000466100 PP632Q6XCG6 107 aa4.05□□□□□ -1.76
VCP-204ENST00000466100 SPRR2EP22531 72 aa4.04□□□□□ -1.76
VCP-204ENST00000466100 SPRR2BP35325 72 aa4.04□□□□□ -1.76
VCP-204ENST00000466100 SPRR2AP35326 72 aa4.04□□□□□ -1.76
VCP-204ENST00000466100 LCE4AQ5TA78 99 aa4.01□□□□□ -1.77
VCP-204ENST00000466100 KRTAP19-3Q7Z4W3 81 aa4□□□□□ -1.77
VCP-204ENST00000466100 MT1LQ93083 61 aa4□□□□□ -1.77
VCP-204ENST00000466100 LCE5AQ5TCM9 118 aa3.98□□□□□ -1.77
VCP-204ENST00000466100 KRTAP4-2Q9BYR5 136 aa3.98□□□□□ -1.77
VCP-204ENST00000466100 MT1GP13640 62 aa3.93□□□□□ -1.78
VCP-204ENST00000466100 KRTAP19-4Q3LI73 84 aa3.91□□□□□ -1.78
VCP-204ENST00000466100 KRTAP4-11Q9BYQ6 195 aa3.91□□□□□ -1.78
VCP-204ENST00000466100 SPRR2DP22532 72 aa3.9□□□□□ -1.79
VCP-204ENST00000466100 KRTAP15-1Q3LI76 137 aa3.9□□□□□ -1.79
VCP-204ENST00000466100 MT1MQ8N339 61 aa3.9□□□□□ -1.79
VCP-204ENST00000466100 PRAC1Q96KF2 57 aa3.9□□□□□ -1.79
VCP-204ENST00000466100 KTN1-AS1Q86SY8 53 aa3.88□□□□□ -1.79
VCP-204ENST00000466100 DSTQ03001 7570 aaKnown RBP3.82□□□□□ -1.8
VCP-204ENST00000466100 KRTAP20-1Q3LI63 56 aa3.8□□□□□ -1.8
VCP-204ENST00000466100 KRTAP2-3P0C7H8 128 aa3.79□□□□□ -1.8
VCP-204ENST00000466100 KRTAP4-3Q9BYR4 195 aa3.79□□□□□ -1.8
VCP-204ENST00000466100 KRTAP2-4Q9BYR9 128 aa3.79□□□□□ -1.8
VCP-204ENST00000466100 LCE3CQ5T5A8 94 aa3.77□□□□□ -1.81
VCP-204ENST00000466100 H3BS24 57 aa3.75□□□□□ -1.81
VCP-204ENST00000466100 KRTAP2-2Q9BYT5 123 aa3.69□□□□□ -1.82
VCP-204ENST00000466100 KRTAP2-1Q9BYU5 128 aa3.69□□□□□ -1.82
VCP-204ENST00000466100 SVIPQ8NHG7 77 aa3.62□□□□□ -1.83
VCP-204ENST00000466100 KRTAP9-6A8MVA2 160 aa3.6□□□□□ -1.83
VCP-204ENST00000466100 KRTAP5-3Q6L8H2 238 aa3.57□□□□□ -1.84
VCP-204ENST00000466100 KRTAP5-5Q701N2 237 aaPredicted RBP3.57□□□□□ -1.84
VCP-204ENST00000466100 SPRR5A0A1B0GTR4 108 aa3.54□□□□□ -1.84
VCP-204ENST00000466100 KRTAP5-4Q6L8H1 288 aa3.53□□□□□ -1.84
VCP-204ENST00000466100 HMCN1Q96RW7 5635 aa3.46□□□□□ -1.86
VCP-204ENST00000466100 SYNE1Q8NF91 8797 aaKnown RBP3.44□□□□□ -1.86
VCP-204ENST00000466100 MT1AP04731 61 aa3.4□□□□□ -1.87
VCP-204ENST00000466100 MT4P47944 62 aa3.38□□□□□ -1.87
VCP-204ENST00000466100 KRTAP6-1Q3LI64 71 aa3.37□□□□□ -1.87
VCP-204ENST00000466100 KRTAP12-4P60329 112 aa3.31□□□□□ -1.88
VCP-204ENST00000466100 KRTAP20-2Q3LI61 65 aa3.29□□□□□ -1.88
VCP-204ENST00000466100 AHNAK2Q8IVF2 5795 aa3.21□□□□□ -1.89
VCP-204ENST00000466100 LUZP6Q538Z0 58 aa3.17□□□□□ -1.9
VCP-204ENST00000466100 KRTAP5-2Q701N4 177 aa3.17□□□□□ -1.9
VCP-204ENST00000466100 KRTAP6-2Q3LI66 62 aa3.13□□□□□ -1.91
VCP-204ENST00000466100 GPR98Q8WXG9 6306 aa3.09□□□□□ -1.91
VCP-204ENST00000466100 MT3P25713 68 aa3.06□□□□□ -1.92
VCP-204ENST00000466100 KRTAP5-10Q6L8G5 202 aa3□□□□□ -1.93
VCP-204ENST00000466100 NDUFAF8A1L188 74 aa2.93□□□□□ -1.94
VCP-204ENST00000466100 OBSCNQ5VST9 7968 aa2.9□□□□□ -1.95
VCP-204ENST00000466100 KRTAP5-8O75690 187 aa2.82□□□□□ -1.96
VCP-204ENST00000466100 KRTAP5-7Q6L8G8 165 aa2.82□□□□□ -1.96
VCP-204ENST00000466100 MUC5ACP98088 5654 aa2.77□□□□□ -1.97
VCP-204ENST00000466100 LCE3DQ9BYE3 92 aa2.77□□□□□ -1.97
VCP-204ENST00000466100 KRTAP5-1Q6L8H4 278 aa2.76□□□□□ -1.97
VCP-204ENST00000466100 LCE1EQ5T753 118 aa2.75□□□□□ -1.97
VCP-204ENST00000466100 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.69□□□□□ -1.98
VCP-204ENST00000466100 LCE3EQ5T5B0 92 aa2.66□□□□□ -1.98
VCP-204ENST00000466100 KRTAP5-11Q6L8G4 156 aa2.64□□□□□ -1.99
VCP-204ENST00000466100 MUC5BQ9HC84 5762 aaPredicted RBP2.6□□□□□ -1.99
VCP-204ENST00000466100 LCE1CQ5T751 118 aa2.56□□□□□ -2
VCP-204ENST00000466100 LCE1BQ5T7P3 118 aa2.56□□□□□ -2
VCP-204ENST00000466100 AHNAKQ09666 5890 aaKnown RBP2.53□□□□□ -2
VCP-204ENST00000466100 A0A0A0MQY5 61 aa2.47□□□□□ -2.01
VCP-204ENST00000466100 INE1O15225 51 aa2.42□□□□□ -2.02
VCP-204ENST00000466100 KRTAP21-2Q3LI59 83 aa2.23□□□□□ -2.05
VCP-204ENST00000466100 KRTAP4-4Q9BYR3 166 aa2.23□□□□□ -2.05
VCP-204ENST00000466100 PRM1P04553 51 aa2.21□□□□□ -2.06
VCP-204ENST00000466100 LCE1FQ5T754 118 aa2.13□□□□□ -2.07
VCP-204ENST00000466100 PHGR1C9JFL3 82 aa1.97□□□□□ -2.09
VCP-204ENST00000466100 MUC19Q7Z5P9 8384 aa1.76□□□□□ -2.13
VCP-204ENST00000466100 KRTAP21-1Q3LI58 79 aa1.32□□□□□ -2.2
VCP-204ENST00000466100 MUC16Q8WXI7 14507 aa1.27□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 70.4 ms