RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 C10orf95Q9H7T3 257 aa4.45□□□□□ -1.7
CUX1-207ENST00000465461 KRTAP20-1Q3LI63 56 aa4.41□□□□□ -1.7
CUX1-207ENST00000465461 MDN1Q9NU22 5596 aa4.4□□□□□ -1.7
CUX1-207ENST00000465461 A6NED7 52 aa4.39□□□□□ -1.71
CUX1-207ENST00000465461 KRTAP19-7Q3SYF9 63 aa4.38□□□□□ -1.71
CUX1-207ENST00000465461 SPRR2DP22532 72 aa4.35□□□□□ -1.71
CUX1-207ENST00000465461 TNP1P09430 55 aa4.34□□□□□ -1.71
CUX1-207ENST00000465461 KRTAP2-3P0C7H8 128 aa4.33□□□□□ -1.72
CUX1-207ENST00000465461 KRTAP19-5Q3LI72 72 aa4.33□□□□□ -1.72
CUX1-207ENST00000465461 KRTAP2-4Q9BYR9 128 aa4.33□□□□□ -1.72
CUX1-207ENST00000465461 K7ERS5 55 aa4.32□□□□□ -1.72
CUX1-207ENST00000465461 MT1EP04732 61 aa4.32□□□□□ -1.72
CUX1-207ENST00000465461 LCE3AQ5TA76 89 aa4.31□□□□□ -1.72
CUX1-207ENST00000465461 KRTAP19-3Q7Z4W3 81 aa4.24□□□□□ -1.73
CUX1-207ENST00000465461 CDC42SE1Q9NRR8 79 aa4.21□□□□□ -1.74
CUX1-207ENST00000465461 KRTAP2-2Q9BYT5 123 aa4.2□□□□□ -1.74
CUX1-207ENST00000465461 KRTAP2-1Q9BYU5 128 aa4.2□□□□□ -1.74
CUX1-207ENST00000465461 MT1LQ93083 61 aa4.17□□□□□ -1.74
CUX1-207ENST00000465461 KRTAP25-1Q3LHN0 102 aa4.16□□□□□ -1.74
CUX1-207ENST00000465461 MT1GP13640 62 aa4.14□□□□□ -1.75
CUX1-207ENST00000465461 KRTAP12-3P60328 96 aa4.12□□□□□ -1.75
CUX1-207ENST00000465461 MT1MQ8N339 61 aa4.11□□□□□ -1.75
CUX1-207ENST00000465461 KRTAP15-1Q3LI76 137 aa4.09□□□□□ -1.75
CUX1-207ENST00000465461 PP632Q6XCG6 107 aa4.08□□□□□ -1.76
CUX1-207ENST00000465461 KRTAP4-3Q9BYR4 195 aa4.08□□□□□ -1.76
CUX1-207ENST00000465461 ROMO1P60602 79 aa4.07□□□□□ -1.76
CUX1-207ENST00000465461 BRK1Q8WUW1 75 aa4.07□□□□□ -1.76
CUX1-207ENST00000465461 DSTQ03001 7570 aaKnown RBP4.05□□□□□ -1.76
CUX1-207ENST00000465461 KRTAP23-1A1A580 65 aa4.03□□□□□ -1.76
CUX1-207ENST00000465461 MT4P47944 62 aa3.83□□□□□ -1.8
CUX1-207ENST00000465461 LCE3CQ5T5A8 94 aa3.82□□□□□ -1.8
CUX1-207ENST00000465461 PMAIP1Q13794 54 aa3.81□□□□□ -1.8
CUX1-207ENST00000465461 KRTAP5-4Q6L8H1 288 aa3.79□□□□□ -1.8
CUX1-207ENST00000465461 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.76□□□□□ -1.81
CUX1-207ENST00000465461 KRTAP5-5Q701N2 237 aaPredicted RBP3.73□□□□□ -1.81
CUX1-207ENST00000465461 PRO0628Q9UI54 55 aa3.72□□□□□ -1.81
CUX1-207ENST00000465461 SVIPQ8NHG7 77 aa3.68□□□□□ -1.82
CUX1-207ENST00000465461 KRTAP5-11Q6L8G4 156 aa3.65□□□□□ -1.83
CUX1-207ENST00000465461 PRAC1Q96KF2 57 aa3.65□□□□□ -1.83
CUX1-207ENST00000465461 KRTAP9-6A8MVA2 160 aa3.63□□□□□ -1.83
CUX1-207ENST00000465461 HMCN1Q96RW7 5635 aa3.62□□□□□ -1.83
CUX1-207ENST00000465461 KRTAP20-2Q3LI61 65 aa3.58□□□□□ -1.84
CUX1-207ENST00000465461 KRTAP12-4P60329 112 aa3.57□□□□□ -1.84
CUX1-207ENST00000465461 SYNE1Q8NF91 8797 aaKnown RBP3.55□□□□□ -1.84
CUX1-207ENST00000465461 SPRR5A0A1B0GTR4 108 aa3.54□□□□□ -1.84
CUX1-207ENST00000465461 MT1AP04731 61 aa3.53□□□□□ -1.84
CUX1-207ENST00000465461 KRTAP6-1Q3LI64 71 aa3.53□□□□□ -1.84
CUX1-207ENST00000465461 KTN1-AS1Q86SY8 53 aa3.52□□□□□ -1.85
CUX1-207ENST00000465461 GPR98Q8WXG9 6306 aa3.51□□□□□ -1.85
CUX1-207ENST00000465461 LCE1EQ5T753 118 aa3.44□□□□□ -1.86
CUX1-207ENST00000465461 KRTAP5-10Q6L8G5 202 aa3.43□□□□□ -1.86
CUX1-207ENST00000465461 AHNAK2Q8IVF2 5795 aa3.43□□□□□ -1.86
CUX1-207ENST00000465461 KRTAP5-2Q701N4 177 aa3.35□□□□□ -1.87
CUX1-207ENST00000465461 KRTAP6-2Q3LI66 62 aa3.34□□□□□ -1.87
CUX1-207ENST00000465461 A0A0A0MQY5 61 aa3.29□□□□□ -1.88
CUX1-207ENST00000465461 KRTAP5-7Q6L8G8 165 aa3.26□□□□□ -1.89
CUX1-207ENST00000465461 KRTAP5-1Q6L8H4 278 aa3.23□□□□□ -1.89
CUX1-207ENST00000465461 MT3P25713 68 aa3.21□□□□□ -1.9
CUX1-207ENST00000465461 KRTAP5-8O75690 187 aa3.12□□□□□ -1.91
CUX1-207ENST00000465461 KRTAP4-4Q9BYR3 166 aa3.11□□□□□ -1.91
CUX1-207ENST00000465461 OBSCNQ5VST9 7968 aa3.06□□□□□ -1.92
CUX1-207ENST00000465461 LUZP6Q538Z0 58 aa3.02□□□□□ -1.93
CUX1-207ENST00000465461 MUC5ACP98088 5654 aa2.8□□□□□ -1.96
CUX1-207ENST00000465461 LCE1BQ5T7P3 118 aa2.78□□□□□ -1.96
CUX1-207ENST00000465461 LCE3DQ9BYE3 92 aa2.77□□□□□ -1.97
CUX1-207ENST00000465461 MUC5BQ9HC84 5762 aaPredicted RBP2.75□□□□□ -1.97
CUX1-207ENST00000465461 AHNAKQ09666 5890 aaKnown RBP2.72□□□□□ -1.97
CUX1-207ENST00000465461 LCE1FQ5T754 118 aa2.71□□□□□ -1.98
CUX1-207ENST00000465461 NDUFAF8A1L188 74 aa2.69□□□□□ -1.98
CUX1-207ENST00000465461 LCE1CQ5T751 118 aa2.68□□□□□ -1.98
CUX1-207ENST00000465461 LCE3EQ5T5B0 92 aa2.64□□□□□ -1.99
CUX1-207ENST00000465461 KRTAP21-2Q3LI59 83 aa2.31□□□□□ -2.04
CUX1-207ENST00000465461 INE1O15225 51 aa2.14□□□□□ -2.07
CUX1-207ENST00000465461 PRM1P04553 51 aa2.12□□□□□ -2.07
CUX1-207ENST00000465461 PHGR1C9JFL3 82 aa2.09□□□□□ -2.07
CUX1-207ENST00000465461 MUC19Q7Z5P9 8384 aa1.86□□□□□ -2.11
CUX1-207ENST00000465461 KRTAP21-1Q3LI58 79 aa1.48□□□□□ -2.17
CUX1-207ENST00000465461 MUC16Q8WXI7 14507 aa1.31□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 10.5 ms