RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 MT1EP04732 61 aa6.53□□□□□ -1.36
COL7A1-205ENST00000465238 KRTAP19-5Q3LI72 72 aa6.53□□□□□ -1.36
COL7A1-205ENST00000465238 KRTAP19-3Q7Z4W3 81 aa6.53□□□□□ -1.36
COL7A1-205ENST00000465238 CDC42SE1Q9NRR8 79 aa6.53□□□□□ -1.36
COL7A1-205ENST00000465238 KRTAP25-1Q3LHN0 102 aa6.51□□□□□ -1.37
COL7A1-205ENST00000465238 GPR98Q8WXG9 6306 aa6.49□□□□□ -1.37
COL7A1-205ENST00000465238 KRTAP4-9Q9BYQ8 210 aa6.44□□□□□ -1.38
COL7A1-205ENST00000465238 MT1GP13640 62 aa6.36□□□□□ -1.39
COL7A1-205ENST00000465238 ROMO1P60602 79 aa6.35□□□□□ -1.39
COL7A1-205ENST00000465238 PP632Q6XCG6 107 aa6.32□□□□□ -1.4
COL7A1-205ENST00000465238 KRTAP12-3P60328 96 aa6.31□□□□□ -1.4
COL7A1-205ENST00000465238 MT1LQ93083 61 aa6.29□□□□□ -1.4
COL7A1-205ENST00000465238 LCE1DQ5T752 114 aa6.28□□□□□ -1.4
COL7A1-205ENST00000465238 KRTAP23-1A1A580 65 aa6.27□□□□□ -1.41
COL7A1-205ENST00000465238 LCE4AQ5TA78 99 aa6.25□□□□□ -1.41
COL7A1-205ENST00000465238 MT1MQ8N339 61 aa6.23□□□□□ -1.41
COL7A1-205ENST00000465238 HMCN1Q96RW7 5635 aa6.22□□□□□ -1.41
COL7A1-205ENST00000465238 BRK1Q8WUW1 75 aa6.19□□□□□ -1.42
COL7A1-205ENST00000465238 MT4P47944 62 aa6.18□□□□□ -1.42
COL7A1-205ENST00000465238 KRTAP5-4Q6L8H1 288 aa6.08□□□□□ -1.44
COL7A1-205ENST00000465238 KRTAP4-3Q9BYR4 195 aa6.07□□□□□ -1.44
COL7A1-205ENST00000465238 AHNAK2Q8IVF2 5795 aa6.06□□□□□ -1.44
COL7A1-205ENST00000465238 KRTAP15-1Q3LI76 137 aa6.02□□□□□ -1.45
COL7A1-205ENST00000465238 KRTAP4-7Q9BYR0 210 aa6□□□□□ -1.45
COL7A1-205ENST00000465238 KRTAP19-4Q3LI73 84 aa5.99□□□□□ -1.45
COL7A1-205ENST00000465238 KRTAP4-6Q9BYQ5 205 aa5.98□□□□□ -1.45
COL7A1-205ENST00000465238 KRTAP5-10Q6L8G5 202 aa5.95□□□□□ -1.46
COL7A1-205ENST00000465238 PMAIP1Q13794 54 aa5.85□□□□□ -1.47
COL7A1-205ENST00000465238 LCE3CQ5T5A8 94 aa5.85□□□□□ -1.47
COL7A1-205ENST00000465238 KRTAP5-3Q6L8H2 238 aa5.77□□□□□ -1.49
COL7A1-205ENST00000465238 KRTAP20-2Q3LI61 65 aa5.75□□□□□ -1.49
COL7A1-205ENST00000465238 KRTAP5-7Q6L8G8 165 aa5.75□□□□□ -1.49
COL7A1-205ENST00000465238 KRTAP5-5Q701N2 237 aaPredicted RBP5.74□□□□□ -1.49
COL7A1-205ENST00000465238 SPRR5A0A1B0GTR4 108 aa5.71□□□□□ -1.5
COL7A1-205ENST00000465238 PRO0628Q9UI54 55 aa5.67□□□□□ -1.5
COL7A1-205ENST00000465238 LOC100996750A0A140TA64 210 aa5.66□□□□□ -1.5
COL7A1-205ENST00000465238 KRTAP12-4P60329 112 aa5.66□□□□□ -1.5
COL7A1-205ENST00000465238 SYNE1Q8NF91 8797 aaKnown RBP5.57□□□□□ -1.52
COL7A1-205ENST00000465238 PRAC1Q96KF2 57 aa5.53□□□□□ -1.52
COL7A1-205ENST00000465238 KRTAP9-6A8MVA2 160 aa5.46□□□□□ -1.54
COL7A1-205ENST00000465238 MT1AP04731 61 aa5.37□□□□□ -1.55
COL7A1-205ENST00000465238 KTN1-AS1Q86SY8 53 aa5.35□□□□□ -1.55
COL7A1-205ENST00000465238 KRTAP6-1Q3LI64 71 aa5.3□□□□□ -1.56
COL7A1-205ENST00000465238 KRTAP4-11Q9BYQ6 195 aa5.3□□□□□ -1.56
COL7A1-205ENST00000465238 KRTAP5-2Q701N4 177 aa5.29□□□□□ -1.56
COL7A1-205ENST00000465238 KRTAP9-4Q9BYQ2 154 aa5.16□□□□□ -1.58
COL7A1-205ENST00000465238 KRTAP5-8O75690 187 aa5.12□□□□□ -1.59
COL7A1-205ENST00000465238 SVIPQ8NHG7 77 aa5.12□□□□□ -1.59
COL7A1-205ENST00000465238 KRTAP6-2Q3LI66 62 aa5.06□□□□□ -1.6
COL7A1-205ENST00000465238 AHNAKQ09666 5890 aaKnown RBP5.04□□□□□ -1.6
COL7A1-205ENST00000465238 OBSCNQ5VST9 7968 aa5.03□□□□□ -1.6
COL7A1-205ENST00000465238 MUC5BQ9HC84 5762 aaPredicted RBP5.03□□□□□ -1.6
COL7A1-205ENST00000465238 MUC5ACP98088 5654 aa5.03□□□□□ -1.6
COL7A1-205ENST00000465238 MT3P25713 68 aa4.92□□□□□ -1.62
COL7A1-205ENST00000465238 KRTAP9-9Q9BYP9 154 aa4.91□□□□□ -1.62
COL7A1-205ENST00000465238 KRTAP5-1Q6L8H4 278 aa4.77□□□□□ -1.65
COL7A1-205ENST00000465238 LUZP6Q538Z0 58 aa4.67□□□□□ -1.66
COL7A1-205ENST00000465238 LCE1EQ5T753 118 aa4.52□□□□□ -1.69
COL7A1-205ENST00000465238 LCE3DQ9BYE3 92 aa4.29□□□□□ -1.72
COL7A1-205ENST00000465238 KRTAP4-2Q9BYR5 136 aa4.26□□□□□ -1.73
COL7A1-205ENST00000465238 LCE1BQ5T7P3 118 aa4.24□□□□□ -1.73
COL7A1-205ENST00000465238 LCE1CQ5T751 118 aa4.19□□□□□ -1.74
COL7A1-205ENST00000465238 LCE3EQ5T5B0 92 aa4.1□□□□□ -1.75
COL7A1-205ENST00000465238 NDUFAF8A1L188 74 aa4.03□□□□□ -1.76
COL7A1-205ENST00000465238 KRTAP4-12Q9BQ66 201 aa3.92□□□□□ -1.78
COL7A1-205ENST00000465238 KRTAP5-11Q6L8G4 156 aa3.81□□□□□ -1.8
COL7A1-205ENST00000465238 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.79□□□□□ -1.8
COL7A1-205ENST00000465238 LCE1FQ5T754 118 aa3.77□□□□□ -1.81
COL7A1-205ENST00000465238 PHGR1C9JFL3 82 aa3.48□□□□□ -1.85
COL7A1-205ENST00000465238 KRTAP21-2Q3LI59 83 aa3.48□□□□□ -1.85
COL7A1-205ENST00000465238 A0A0A0MQY5 61 aa3.39□□□□□ -1.87
COL7A1-205ENST00000465238 INE1O15225 51 aa3.31□□□□□ -1.88
COL7A1-205ENST00000465238 PRM1P04553 51 aa3.25□□□□□ -1.89
COL7A1-205ENST00000465238 KRTAP4-4Q9BYR3 166 aa3.19□□□□□ -1.9
COL7A1-205ENST00000465238 H3BS24 57 aa3.14□□□□□ -1.91
COL7A1-205ENST00000465238 MUC19Q7Z5P9 8384 aa3.12□□□□□ -1.91
COL7A1-205ENST00000465238 KRTAP21-1Q3LI58 79 aa2.65□□□□□ -1.99
COL7A1-205ENST00000465238 MUC16Q8WXI7 14507 aa2.17□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 11.4 ms