RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 ROMO1P60602 79 aa7.2□□□□□ -1.26
COL9A3-204ENST00000463487 LCE5AQ5TCM9 118 aa7.15□□□□□ -1.26
COL9A3-204ENST00000463487 KRTAP23-1A1A580 65 aa7.14□□□□□ -1.27
COL9A3-204ENST00000463487 KRTAP12-3P60328 96 aa7.13□□□□□ -1.27
COL9A3-204ENST00000463487 PP632Q6XCG6 107 aa7.12□□□□□ -1.27
COL9A3-204ENST00000463487 MT1GP13640 62 aa7.1□□□□□ -1.27
COL9A3-204ENST00000463487 LCE3BQ5TA77 95 aa7.06□□□□□ -1.28
COL9A3-204ENST00000463487 BRK1Q8WUW1 75 aa7.06□□□□□ -1.28
COL9A3-204ENST00000463487 MT1LQ93083 61 aa7.06□□□□□ -1.28
COL9A3-204ENST00000463487 KRTAP2-2Q9BYT5 123 aa7.03□□□□□ -1.28
COL9A3-204ENST00000463487 KRTAP2-1Q9BYU5 128 aa7.03□□□□□ -1.28
COL9A3-204ENST00000463487 MT1MQ8N339 61 aa6.94□□□□□ -1.3
COL9A3-204ENST00000463487 DSTQ03001 7570 aaKnown RBP6.84□□□□□ -1.31
COL9A3-204ENST00000463487 KRTAP19-4Q3LI73 84 aa6.83□□□□□ -1.32
COL9A3-204ENST00000463487 KRTAP15-1Q3LI76 137 aa6.8□□□□□ -1.32
COL9A3-204ENST00000463487 KRTAP4-3Q9BYR4 195 aa6.7□□□□□ -1.34
COL9A3-204ENST00000463487 PMAIP1Q13794 54 aa6.67□□□□□ -1.34
COL9A3-204ENST00000463487 KRTAP4-7Q9BYR0 210 aa6.67□□□□□ -1.34
COL9A3-204ENST00000463487 LCE3CQ5T5A8 94 aa6.59□□□□□ -1.35
COL9A3-204ENST00000463487 PRO0628Q9UI54 55 aa6.5□□□□□ -1.37
COL9A3-204ENST00000463487 LCE4AQ5TA78 99 aa6.49□□□□□ -1.37
COL9A3-204ENST00000463487 KRTAP4-9Q9BYQ8 210 aa6.4□□□□□ -1.38
COL9A3-204ENST00000463487 KRTAP5-4Q6L8H1 288 aa6.38□□□□□ -1.39
COL9A3-204ENST00000463487 LCE1DQ5T752 114 aa6.33□□□□□ -1.4
COL9A3-204ENST00000463487 MT4P47944 62 aa6.32□□□□□ -1.4
COL9A3-204ENST00000463487 LOC100996750A0A140TA64 210 aa6.31□□□□□ -1.4
COL9A3-204ENST00000463487 KRTAP5-5Q701N2 237 aaPredicted RBP6.3□□□□□ -1.4
COL9A3-204ENST00000463487 PRAC1Q96KF2 57 aa6.23□□□□□ -1.41
COL9A3-204ENST00000463487 KRTAP12-4P60329 112 aa6.15□□□□□ -1.42
COL9A3-204ENST00000463487 HMCN1Q96RW7 5635 aa6.15□□□□□ -1.43
COL9A3-204ENST00000463487 KRTAP4-6Q9BYQ5 205 aa6.14□□□□□ -1.43
COL9A3-204ENST00000463487 KTN1-AS1Q86SY8 53 aa6.13□□□□□ -1.43
COL9A3-204ENST00000463487 KRTAP9-6A8MVA2 160 aa6.1□□□□□ -1.43
COL9A3-204ENST00000463487 SPRR5A0A1B0GTR4 108 aa6.07□□□□□ -1.44
COL9A3-204ENST00000463487 MT1AP04731 61 aa6.04□□□□□ -1.44
COL9A3-204ENST00000463487 KRTAP20-2Q3LI61 65 aa6.01□□□□□ -1.45
COL9A3-204ENST00000463487 KRTAP6-1Q3LI64 71 aa5.93□□□□□ -1.46
COL9A3-204ENST00000463487 SYNE1Q8NF91 8797 aaKnown RBP5.89□□□□□ -1.47
COL9A3-204ENST00000463487 SVIPQ8NHG7 77 aa5.88□□□□□ -1.47
COL9A3-204ENST00000463487 GPR98Q8WXG9 6306 aa5.85□□□□□ -1.47
COL9A3-204ENST00000463487 AHNAK2Q8IVF2 5795 aa5.78□□□□□ -1.48
COL9A3-204ENST00000463487 KRTAP5-3Q6L8H2 238 aa5.78□□□□□ -1.48
COL9A3-204ENST00000463487 KRTAP9-4Q9BYQ2 154 aa5.78□□□□□ -1.48
COL9A3-204ENST00000463487 KRTAP5-10Q6L8G5 202 aa5.66□□□□□ -1.5
COL9A3-204ENST00000463487 KRTAP5-2Q701N4 177 aa5.65□□□□□ -1.5
COL9A3-204ENST00000463487 KRTAP6-2Q3LI66 62 aa5.61□□□□□ -1.51
COL9A3-204ENST00000463487 MT3P25713 68 aa5.55□□□□□ -1.52
COL9A3-204ENST00000463487 KRTAP5-7Q6L8G8 165 aa5.41□□□□□ -1.54
COL9A3-204ENST00000463487 KRTAP4-11Q9BYQ6 195 aa5.4□□□□□ -1.54
COL9A3-204ENST00000463487 LUZP6Q538Z0 58 aa5.38□□□□□ -1.55
COL9A3-204ENST00000463487 OBSCNQ5VST9 7968 aa5.21□□□□□ -1.58
COL9A3-204ENST00000463487 KRTAP5-8O75690 187 aa5.18□□□□□ -1.58
COL9A3-204ENST00000463487 LCE1EQ5T753 118 aa4.99□□□□□ -1.61
COL9A3-204ENST00000463487 KRTAP5-1Q6L8H4 278 aa4.98□□□□□ -1.61
COL9A3-204ENST00000463487 KRTAP9-9Q9BYP9 154 aa4.92□□□□□ -1.62
COL9A3-204ENST00000463487 LCE3DQ9BYE3 92 aa4.85□□□□□ -1.63
COL9A3-204ENST00000463487 MUC5ACP98088 5654 aa4.8□□□□□ -1.64
COL9A3-204ENST00000463487 MUC5BQ9HC84 5762 aaPredicted RBP4.69□□□□□ -1.66
COL9A3-204ENST00000463487 LCE1BQ5T7P3 118 aa4.65□□□□□ -1.67
COL9A3-204ENST00000463487 AHNAKQ09666 5890 aaKnown RBP4.64□□□□□ -1.67
COL9A3-204ENST00000463487 LCE3EQ5T5B0 92 aa4.63□□□□□ -1.67
COL9A3-204ENST00000463487 LCE1CQ5T751 118 aa4.61□□□□□ -1.67
COL9A3-204ENST00000463487 KRTAP4-2Q9BYR5 136 aa4.6□□□□□ -1.67
COL9A3-204ENST00000463487 NDUFAF8A1L188 74 aa4.59□□□□□ -1.67
COL9A3-204ENST00000463487 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.23□□□□□ -1.73
COL9A3-204ENST00000463487 KRTAP5-11Q6L8G4 156 aa4.14□□□□□ -1.75
COL9A3-204ENST00000463487 KRTAP4-12Q9BQ66 201 aa4.02□□□□□ -1.77
COL9A3-204ENST00000463487 LCE1FQ5T754 118 aa3.97□□□□□ -1.77
COL9A3-204ENST00000463487 A0A0A0MQY5 61 aa3.93□□□□□ -1.78
COL9A3-204ENST00000463487 KRTAP21-2Q3LI59 83 aa3.89□□□□□ -1.79
COL9A3-204ENST00000463487 INE1O15225 51 aa3.82□□□□□ -1.8
COL9A3-204ENST00000463487 PRM1P04553 51 aa3.67□□□□□ -1.82
COL9A3-204ENST00000463487 PHGR1C9JFL3 82 aa3.56□□□□□ -1.84
COL9A3-204ENST00000463487 KRTAP4-4Q9BYR3 166 aa3.49□□□□□ -1.85
COL9A3-204ENST00000463487 MUC19Q7Z5P9 8384 aa3.15□□□□□ -1.9
COL9A3-204ENST00000463487 H3BS24 57 aa2.69□□□□□ -1.98
COL9A3-204ENST00000463487 KRTAP21-1Q3LI58 79 aa2.54□□□□□ -2
COL9A3-204ENST00000463487 MUC16Q8WXI7 14507 aa2.32□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 62.8 ms