RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 KRTAP2-3P0C7H8 128 aa4.01□□□□□ -1.77
UBR4-208ENST00000459947 KRTAP2-4Q9BYR9 128 aa4.01□□□□□ -1.77
UBR4-208ENST00000459947 KRTAP15-1Q3LI76 137 aa4□□□□□ -1.77
UBR4-208ENST00000459947 SPRR2DP22532 72 aa3.99□□□□□ -1.77
UBR4-208ENST00000459947 KRTAP23-1A1A580 65 aa3.97□□□□□ -1.77
UBR4-208ENST00000459947 MT1EP04732 61 aa3.97□□□□□ -1.77
UBR4-208ENST00000459947 KRTAP19-7Q3SYF9 63 aa3.97□□□□□ -1.77
UBR4-208ENST00000459947 LCE3AQ5TA76 89 aa3.95□□□□□ -1.78
UBR4-208ENST00000459947 KMT2DO14686 5537 aa3.93□□□□□ -1.78
UBR4-208ENST00000459947 KRTAP19-5Q3LI72 72 aa3.93□□□□□ -1.78
UBR4-208ENST00000459947 PP632Q6XCG6 107 aa3.93□□□□□ -1.78
UBR4-208ENST00000459947 KRTAP19-3Q7Z4W3 81 aa3.93□□□□□ -1.78
UBR4-208ENST00000459947 MT1GP13640 62 aa3.89□□□□□ -1.79
UBR4-208ENST00000459947 KRTAP19-4Q3LI73 84 aa3.88□□□□□ -1.79
UBR4-208ENST00000459947 KRTAP2-2Q9BYT5 123 aa3.88□□□□□ -1.79
UBR4-208ENST00000459947 KRTAP2-1Q9BYU5 128 aa3.88□□□□□ -1.79
UBR4-208ENST00000459947 LCE5AQ5TCM9 118 aa3.88□□□□□ -1.79
UBR4-208ENST00000459947 MUC12Q9UKN1 5478 aa3.87□□□□□ -1.79
UBR4-208ENST00000459947 KRTAP12-3P60328 96 aa3.85□□□□□ -1.79
UBR4-208ENST00000459947 LCE3BQ5TA77 95 aa3.85□□□□□ -1.79
UBR4-208ENST00000459947 MDN1Q9NU22 5596 aa3.84□□□□□ -1.8
UBR4-208ENST00000459947 MT1LQ93083 61 aa3.82□□□□□ -1.8
UBR4-208ENST00000459947 MT1MQ8N339 61 aa3.77□□□□□ -1.81
UBR4-208ENST00000459947 INE1O15225 51 aa3.67□□□□□ -1.82
UBR4-208ENST00000459947 LCE4AQ5TA78 99 aa3.62□□□□□ -1.83
UBR4-208ENST00000459947 LCE3CQ5T5A8 94 aa3.56□□□□□ -1.84
UBR4-208ENST00000459947 KRTAP4-3Q9BYR4 195 aa3.53□□□□□ -1.84
UBR4-208ENST00000459947 KRTAP5-4Q6L8H1 288 aa3.5□□□□□ -1.85
UBR4-208ENST00000459947 KRTAP4-7Q9BYR0 210 aa3.5□□□□□ -1.85
UBR4-208ENST00000459947 LCE1DQ5T752 114 aa3.42□□□□□ -1.86
UBR4-208ENST00000459947 KRTAP5-5Q701N2 237 aaPredicted RBP3.42□□□□□ -1.86
UBR4-208ENST00000459947 KRTAP4-9Q9BYQ8 210 aa3.4□□□□□ -1.86
UBR4-208ENST00000459947 MT4P47944 62 aa3.39□□□□□ -1.87
UBR4-208ENST00000459947 KRTAP12-4P60329 112 aa3.39□□□□□ -1.87
UBR4-208ENST00000459947 SPRR5A0A1B0GTR4 108 aa3.37□□□□□ -1.87
UBR4-208ENST00000459947 MT1AP04731 61 aa3.32□□□□□ -1.88
UBR4-208ENST00000459947 DSTQ03001 7570 aaKnown RBP3.32□□□□□ -1.88
UBR4-208ENST00000459947 LOC100996750A0A140TA64 210 aa3.31□□□□□ -1.88
UBR4-208ENST00000459947 KRTAP4-6Q9BYQ5 205 aa3.27□□□□□ -1.89
UBR4-208ENST00000459947 KRTAP20-2Q3LI61 65 aa3.27□□□□□ -1.89
UBR4-208ENST00000459947 KRTAP9-6A8MVA2 160 aa3.21□□□□□ -1.89
UBR4-208ENST00000459947 HMCN1Q96RW7 5635 aa3.19□□□□□ -1.9
UBR4-208ENST00000459947 GPR98Q8WXG9 6306 aa3.19□□□□□ -1.9
UBR4-208ENST00000459947 KRTAP6-1Q3LI64 71 aa3.18□□□□□ -1.9
UBR4-208ENST00000459947 KRTAP9-4Q9BYQ2 154 aa3.16□□□□□ -1.9
UBR4-208ENST00000459947 KRTAP5-3Q6L8H2 238 aa3.15□□□□□ -1.9
UBR4-208ENST00000459947 AHNAK2Q8IVF2 5795 aa3.12□□□□□ -1.91
UBR4-208ENST00000459947 SYNE1Q8NF91 8797 aaKnown RBP3.11□□□□□ -1.91
UBR4-208ENST00000459947 KRTAP5-10Q6L8G5 202 aa3.1□□□□□ -1.91
UBR4-208ENST00000459947 KRTAP5-2Q701N4 177 aa3.1□□□□□ -1.91
UBR4-208ENST00000459947 MT3P25713 68 aa3.05□□□□□ -1.92
UBR4-208ENST00000459947 KRTAP5-7Q6L8G8 165 aa3.01□□□□□ -1.93
UBR4-208ENST00000459947 KRTAP6-2Q3LI66 62 aa3.01□□□□□ -1.93
UBR4-208ENST00000459947 KRTAP4-11Q9BYQ6 195 aa2.94□□□□□ -1.94
UBR4-208ENST00000459947 OBSCNQ5VST9 7968 aa2.83□□□□□ -1.96
UBR4-208ENST00000459947 KRTAP5-8O75690 187 aa2.81□□□□□ -1.96
UBR4-208ENST00000459947 LCE1EQ5T753 118 aa2.77□□□□□ -1.97
UBR4-208ENST00000459947 KRTAP9-9Q9BYP9 154 aa2.72□□□□□ -1.97
UBR4-208ENST00000459947 KRTAP5-1Q6L8H4 278 aa2.69□□□□□ -1.98
UBR4-208ENST00000459947 LCE3DQ9BYE3 92 aa2.63□□□□□ -1.99
UBR4-208ENST00000459947 AHNAKQ09666 5890 aaKnown RBP2.57□□□□□ -2
UBR4-208ENST00000459947 MUC5ACP98088 5654 aa2.57□□□□□ -2
UBR4-208ENST00000459947 LCE1CQ5T751 118 aa2.53□□□□□ -2
UBR4-208ENST00000459947 LCE1BQ5T7P3 118 aa2.53□□□□□ -2
UBR4-208ENST00000459947 LCE3EQ5T5B0 92 aa2.52□□□□□ -2.01
UBR4-208ENST00000459947 MUC5BQ9HC84 5762 aaPredicted RBP2.5□□□□□ -2.01
UBR4-208ENST00000459947 KRTAP4-2Q9BYR5 136 aa2.5□□□□□ -2.01
UBR4-208ENST00000459947 KRTAP4-12Q9BQ66 201 aa2.49□□□□□ -2.01
UBR4-208ENST00000459947 MUC19Q7Z5P9 8384 aa2.42□□□□□ -2.02
UBR4-208ENST00000459947 PRM1P04553 51 aa2.38□□□□□ -2.03
UBR4-208ENST00000459947 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.35□□□□□ -2.03
UBR4-208ENST00000459947 KRTAP5-11Q6L8G4 156 aa2.29□□□□□ -2.04
UBR4-208ENST00000459947 LCE1FQ5T754 118 aa2.25□□□□□ -2.05
UBR4-208ENST00000459947 KRTAP21-2Q3LI59 83 aa2.1□□□□□ -2.07
UBR4-208ENST00000459947 PHGR1C9JFL3 82 aa1.93□□□□□ -2.1
UBR4-208ENST00000459947 KRTAP4-4Q9BYR3 166 aa1.81□□□□□ -2.12
UBR4-208ENST00000459947 KRTAP21-1Q3LI58 79 aa1.44□□□□□ -2.18
UBR4-208ENST00000459947 MUC16Q8WXI7 14507 aa1.27□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 9.4 ms