RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 KRTAP4-8A0A0G2JLE6 195 aa4.07□□□□□ -1.76
USP39-210ENST00000459775 KRTAP4-8Q9BYQ9 185 aa4.07□□□□□ -1.76
USP39-210ENST00000459775 KRTAP2-1Q9BYU5 128 aa4.06□□□□□ -1.76
USP39-210ENST00000459775 TNP1P09430 55 aa4.03□□□□□ -1.76
USP39-210ENST00000459775 KRTAP10-12P60413 245 aa4.03□□□□□ -1.76
USP39-210ENST00000459775 SPRR2EP22531 72 aa4.01□□□□□ -1.77
USP39-210ENST00000459775 SPRR2BP35325 72 aa4.01□□□□□ -1.77
USP39-210ENST00000459775 SPRR2AP35326 72 aa4.01□□□□□ -1.77
USP39-210ENST00000459775 MDN1Q9NU22 5596 aa3.99□□□□□ -1.77
USP39-210ENST00000459775 LCE5AQ5TCM9 118 aa3.98□□□□□ -1.77
USP39-210ENST00000459775 LCE3AQ5TA76 89 aa3.97□□□□□ -1.77
USP39-210ENST00000459775 SPRR2FQ96RM1 72 aa3.96□□□□□ -1.78
USP39-210ENST00000459775 KRTAP19-4Q3LI73 84 aa3.91□□□□□ -1.78
USP39-210ENST00000459775 LOC100996750A0A140TA64 210 aa3.9□□□□□ -1.79
USP39-210ENST00000459775 KRTAP8-1Q8IUC2 63 aa3.9□□□□□ -1.79
USP39-210ENST00000459775 KRTAP4-6Q9BYQ5 205 aa3.9□□□□□ -1.79
USP39-210ENST00000459775 SPRR2DP22532 72 aa3.89□□□□□ -1.79
USP39-210ENST00000459775 LCE1AQ5T7P2 110 aa3.89□□□□□ -1.79
USP39-210ENST00000459775 KRTAP19-5Q3LI72 72 aa3.86□□□□□ -1.79
USP39-210ENST00000459775 KRTAP19-7Q3SYF9 63 aa3.83□□□□□ -1.8
USP39-210ENST00000459775 LCE3BQ5TA77 95 aa3.82□□□□□ -1.8
USP39-210ENST00000459775 GPR98Q8WXG9 6306 aa3.79□□□□□ -1.8
USP39-210ENST00000459775 KRTAP12-3P60328 96 aa3.78□□□□□ -1.8
USP39-210ENST00000459775 MT1EP04732 61 aa3.76□□□□□ -1.81
USP39-210ENST00000459775 MT1LQ93083 61 aa3.67□□□□□ -1.82
USP39-210ENST00000459775 KRTAP9-4Q9BYQ2 154 aa3.66□□□□□ -1.82
USP39-210ENST00000459775 LCE1FQ5T754 118 aa3.65□□□□□ -1.83
USP39-210ENST00000459775 KRTAP4-7Q9BYR0 210 aa3.64□□□□□ -1.83
USP39-210ENST00000459775 KRTAP19-3Q7Z4W3 81 aa3.62□□□□□ -1.83
USP39-210ENST00000459775 KRTAP4-12Q9BQ66 201 aa3.59□□□□□ -1.84
USP39-210ENST00000459775 KRTAP4-3Q9BYR4 195 aa3.58□□□□□ -1.84
USP39-210ENST00000459775 DSTQ03001 7570 aaKnown RBP3.57□□□□□ -1.84
USP39-210ENST00000459775 MT1GP13640 62 aa3.55□□□□□ -1.84
USP39-210ENST00000459775 MT1MQ8N339 61 aa3.55□□□□□ -1.84
USP39-210ENST00000459775 KRTAP4-9Q9BYQ8 210 aa3.55□□□□□ -1.84
USP39-210ENST00000459775 MT3P25713 68 aa3.54□□□□□ -1.84
USP39-210ENST00000459775 LCE3CQ5T5A8 94 aa3.52□□□□□ -1.85
USP39-210ENST00000459775 LCE4AQ5TA78 99 aa3.51□□□□□ -1.85
USP39-210ENST00000459775 LCE1EQ5T753 118 aa3.5□□□□□ -1.85
USP39-210ENST00000459775 LCE1DQ5T752 114 aa3.49□□□□□ -1.85
USP39-210ENST00000459775 KRTAP9-9Q9BYP9 154 aa3.46□□□□□ -1.86
USP39-210ENST00000459775 KRTAP5-10Q6L8G5 202 aa3.44□□□□□ -1.86
USP39-210ENST00000459775 KRTAP12-4P60329 112 aa3.44□□□□□ -1.86
USP39-210ENST00000459775 KRTAP9-6A8MVA2 160 aa3.41□□□□□ -1.86
USP39-210ENST00000459775 KRTAP5-7Q6L8G8 165 aa3.4□□□□□ -1.86
USP39-210ENST00000459775 HMCN1Q96RW7 5635 aa3.38□□□□□ -1.87
USP39-210ENST00000459775 MT4P47944 62 aa3.37□□□□□ -1.87
USP39-210ENST00000459775 AHNAK2Q8IVF2 5795 aa3.36□□□□□ -1.87
USP39-210ENST00000459775 KRTAP5-4Q6L8H1 288 aa3.3□□□□□ -1.88
USP39-210ENST00000459775 KRTAP5-3Q6L8H2 238 aa3.28□□□□□ -1.89
USP39-210ENST00000459775 KRTAP5-5Q701N2 237 aaPredicted RBP3.2□□□□□ -1.9
USP39-210ENST00000459775 KRTAP6-1Q3LI64 71 aa3.13□□□□□ -1.91
USP39-210ENST00000459775 KRTAP20-2Q3LI61 65 aa3.12□□□□□ -1.91
USP39-210ENST00000459775 SYNE1Q8NF91 8797 aaKnown RBP3.1□□□□□ -1.91
USP39-210ENST00000459775 KRTAP4-2Q9BYR5 136 aa3.08□□□□□ -1.92
USP39-210ENST00000459775 MT1AP04731 61 aa3.08□□□□□ -1.92
USP39-210ENST00000459775 KRTAP4-11Q9BYQ6 195 aa3.07□□□□□ -1.92
USP39-210ENST00000459775 LCE3EQ5T5B0 92 aa3.06□□□□□ -1.92
USP39-210ENST00000459775 AHNAKQ09666 5890 aaKnown RBP2.96□□□□□ -1.94
USP39-210ENST00000459775 LCE3DQ9BYE3 92 aa2.92□□□□□ -1.94
USP39-210ENST00000459775 KRTAP6-2Q3LI66 62 aa2.9□□□□□ -1.94
USP39-210ENST00000459775 MUC5ACP98088 5654 aa2.88□□□□□ -1.95
USP39-210ENST00000459775 OBSCNQ5VST9 7968 aa2.85□□□□□ -1.95
USP39-210ENST00000459775 KRTAP5-8O75690 187 aa2.84□□□□□ -1.96
USP39-210ENST00000459775 KRTAP5-2Q701N4 177 aa2.83□□□□□ -1.96
USP39-210ENST00000459775 MUC5BQ9HC84 5762 aaPredicted RBP2.82□□□□□ -1.96
USP39-210ENST00000459775 PRM1P04553 51 aa2.74□□□□□ -1.97
USP39-210ENST00000459775 KRTAP5-1Q6L8H4 278 aa2.57□□□□□ -2
USP39-210ENST00000459775 LCE1BQ5T7P3 118 aa2.38□□□□□ -2.03
USP39-210ENST00000459775 LCE1CQ5T751 118 aa2.29□□□□□ -2.04
USP39-210ENST00000459775 KRTAP5-11Q6L8G4 156 aa2.13□□□□□ -2.07
USP39-210ENST00000459775 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.09□□□□□ -2.08
USP39-210ENST00000459775 KRTAP21-2Q3LI59 83 aa2.03□□□□□ -2.08
USP39-210ENST00000459775 PHGR1C9JFL3 82 aa2.03□□□□□ -2.08
USP39-210ENST00000459775 KRTAP21-1Q3LI58 79 aa2.01□□□□□ -2.09
USP39-210ENST00000459775 KRTAP4-4Q9BYR3 166 aa1.91□□□□□ -2.1
USP39-210ENST00000459775 MUC19Q7Z5P9 8384 aa1.89□□□□□ -2.11
USP39-210ENST00000459775 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 83.7 ms