RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 KRTAP9-8Q9BYQ0 159 aa4.76□□□□□ -1.65
SYNE2-207ENST00000458046 LCE1AQ5T7P2 110 aa4.74□□□□□ -1.65
SYNE2-207ENST00000458046 KRTAP5-9P26371 169 aa4.67□□□□□ -1.66
SYNE2-207ENST00000458046 LCE3CQ5T5A8 94 aa4.67□□□□□ -1.66
SYNE2-207ENST00000458046 LCE1EQ5T753 118 aa4.67□□□□□ -1.66
SYNE2-207ENST00000458046 KRTAP19-8Q3LI54 63 aa4.66□□□□□ -1.66
SYNE2-207ENST00000458046 MT1BP07438 61 aa4.64□□□□□ -1.67
SYNE2-207ENST00000458046 KRTAP10-5P60370 271 aa4.64□□□□□ -1.67
SYNE2-207ENST00000458046 MT1XP80297 61 aa4.62□□□□□ -1.67
SYNE2-207ENST00000458046 KRTAP8-1Q8IUC2 63 aa4.59□□□□□ -1.67
SYNE2-207ENST00000458046 KRTAP5-7Q6L8G8 165 aa4.56□□□□□ -1.68
SYNE2-207ENST00000458046 KRTAP9-3Q9BYQ3 159 aa4.55□□□□□ -1.68
SYNE2-207ENST00000458046 KRTAP10-12P60413 245 aa4.54□□□□□ -1.68
SYNE2-207ENST00000458046 KRTAP10-7P60409 375 aaPredicted RBP4.53□□□□□ -1.68
SYNE2-207ENST00000458046 KRTAP12-3P60328 96 aa4.52□□□□□ -1.69
SYNE2-207ENST00000458046 KMT2DO14686 5537 aa4.49□□□□□ -1.69
SYNE2-207ENST00000458046 MT3P25713 68 aa4.49□□□□□ -1.69
SYNE2-207ENST00000458046 LCE1DQ5T752 114 aa4.47□□□□□ -1.69
SYNE2-207ENST00000458046 MUC12Q9UKN1 5478 aa4.45□□□□□ -1.7
SYNE2-207ENST00000458046 KRTAP5-10Q6L8G5 202 aa4.4□□□□□ -1.7
SYNE2-207ENST00000458046 AHNAK2Q8IVF2 5795 aa4.37□□□□□ -1.71
SYNE2-207ENST00000458046 LCE3EQ5T5B0 92 aa4.35□□□□□ -1.71
SYNE2-207ENST00000458046 MDN1Q9NU22 5596 aa4.35□□□□□ -1.71
SYNE2-207ENST00000458046 KRTAP19-5Q3LI72 72 aa4.34□□□□□ -1.71
SYNE2-207ENST00000458046 AHNAKQ09666 5890 aaKnown RBP4.3□□□□□ -1.72
SYNE2-207ENST00000458046 MUC5BQ9HC84 5762 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-207ENST00000458046 KRTAP4-8A0A0G2JLE6 195 aa4.28□□□□□ -1.72
SYNE2-207ENST00000458046 KRTAP4-8Q9BYQ9 185 aa4.28□□□□□ -1.72
SYNE2-207ENST00000458046 SPRR2EP22531 72 aa4.27□□□□□ -1.73
SYNE2-207ENST00000458046 SPRR2BP35325 72 aa4.27□□□□□ -1.73
SYNE2-207ENST00000458046 SPRR2AP35326 72 aa4.27□□□□□ -1.73
SYNE2-207ENST00000458046 SPRR2DP22532 72 aa4.18□□□□□ -1.74
SYNE2-207ENST00000458046 KRTAP12-4P60329 112 aa4.18□□□□□ -1.74
SYNE2-207ENST00000458046 LCE3BQ5TA77 95 aa4.18□□□□□ -1.74
SYNE2-207ENST00000458046 KRTAP9-6A8MVA2 160 aa4.13□□□□□ -1.75
SYNE2-207ENST00000458046 KRTAP4-7Q9BYR0 210 aa4.12□□□□□ -1.75
SYNE2-207ENST00000458046 KRTAP19-7Q3SYF9 63 aa4.12□□□□□ -1.75
SYNE2-207ENST00000458046 LCE3DQ9BYE3 92 aa4.06□□□□□ -1.76
SYNE2-207ENST00000458046 HMCN1Q96RW7 5635 aa4.03□□□□□ -1.76
SYNE2-207ENST00000458046 MT1LQ93083 61 aa3.99□□□□□ -1.77
SYNE2-207ENST00000458046 MT1EP04732 61 aa3.99□□□□□ -1.77
SYNE2-207ENST00000458046 SPRR2FQ96RM1 72 aa3.95□□□□□ -1.78
SYNE2-207ENST00000458046 KRTAP5-3Q6L8H2 238 aa3.94□□□□□ -1.78
SYNE2-207ENST00000458046 KRTAP4-9Q9BYQ8 210 aa3.92□□□□□ -1.78
SYNE2-207ENST00000458046 KRTAP4-3Q9BYR4 195 aa3.86□□□□□ -1.79
SYNE2-207ENST00000458046 LOC100996750A0A140TA64 210 aa3.84□□□□□ -1.79
SYNE2-207ENST00000458046 MT1GP13640 62 aa3.79□□□□□ -1.8
SYNE2-207ENST00000458046 DSTQ03001 7570 aaKnown RBP3.77□□□□□ -1.81
SYNE2-207ENST00000458046 KRTAP4-12Q9BQ66 201 aa3.76□□□□□ -1.81
SYNE2-207ENST00000458046 MUC5ACP98088 5654 aa3.75□□□□□ -1.81
SYNE2-207ENST00000458046 MT1MQ8N339 61 aa3.73□□□□□ -1.81
SYNE2-207ENST00000458046 KRTAP19-3Q7Z4W3 81 aa3.72□□□□□ -1.81
SYNE2-207ENST00000458046 KRTAP5-4Q6L8H1 288 aa3.54□□□□□ -1.84
SYNE2-207ENST00000458046 MT4P47944 62 aa3.54□□□□□ -1.84
SYNE2-207ENST00000458046 SYNE1Q8NF91 8797 aaKnown RBP3.51□□□□□ -1.85
SYNE2-207ENST00000458046 KRTAP6-1Q3LI64 71 aa3.42□□□□□ -1.86
SYNE2-207ENST00000458046 KRTAP4-6Q9BYQ5 205 aa3.37□□□□□ -1.87
SYNE2-207ENST00000458046 MT1AP04731 61 aa3.33□□□□□ -1.88
SYNE2-207ENST00000458046 KRTAP5-5Q701N2 237 aaPredicted RBP3.26□□□□□ -1.89
SYNE2-207ENST00000458046 KRTAP4-11Q9BYQ6 195 aa3.26□□□□□ -1.89
SYNE2-207ENST00000458046 KRTAP5-8O75690 187 aa3.25□□□□□ -1.89
SYNE2-207ENST00000458046 OBSCNQ5VST9 7968 aa3.25□□□□□ -1.89
SYNE2-207ENST00000458046 KRTAP20-2Q3LI61 65 aa3.25□□□□□ -1.89
SYNE2-207ENST00000458046 PRM1P04553 51 aa3.14□□□□□ -1.91
SYNE2-207ENST00000458046 KRTAP5-2Q701N4 177 aa3.08□□□□□ -1.92
SYNE2-207ENST00000458046 KRTAP6-2Q3LI66 62 aa3.06□□□□□ -1.92
SYNE2-207ENST00000458046 LCE1CQ5T751 118 aa3□□□□□ -1.93
SYNE2-207ENST00000458046 LCE1BQ5T7P3 118 aa3□□□□□ -1.93
SYNE2-207ENST00000458046 KRTAP4-2Q9BYR5 136 aa2.94□□□□□ -1.94
SYNE2-207ENST00000458046 MUC19Q7Z5P9 8384 aa2.74□□□□□ -1.97
SYNE2-207ENST00000458046 KRTAP5-1Q6L8H4 278 aa2.7□□□□□ -1.98
SYNE2-207ENST00000458046 PHGR1C9JFL3 82 aa2.54□□□□□ -2
SYNE2-207ENST00000458046 KRTAP5-11Q6L8G4 156 aa2.44□□□□□ -2.02
SYNE2-207ENST00000458046 KRTAP21-1Q3LI58 79 aa2.25□□□□□ -2.05
SYNE2-207ENST00000458046 KRTAP21-2Q3LI59 83 aa2.18□□□□□ -2.06
SYNE2-207ENST00000458046 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.13□□□□□ -2.07
SYNE2-207ENST00000458046 KRTAP4-4Q9BYR3 166 aa2.08□□□□□ -2.08
SYNE2-207ENST00000458046 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 71.7 ms