RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 KRTAP25-1Q3LHN0 102 aa7.01□□□□□ -1.29
SQSTM1-204ENST00000453046 LCE3BQ5TA77 95 aa6.93□□□□□ -1.3
SQSTM1-204ENST00000453046 KTN1-AS1Q86SY8 53 aa6.83□□□□□ -1.32
SQSTM1-204ENST00000453046 KRTAP23-1A1A580 65 aa6.79□□□□□ -1.32
SQSTM1-204ENST00000453046 PP632Q6XCG6 107 aa6.74□□□□□ -1.33
SQSTM1-204ENST00000453046 LCE3AQ5TA76 89 aa6.73□□□□□ -1.33
SQSTM1-204ENST00000453046 KRTAP19-7Q3SYF9 63 aa6.72□□□□□ -1.33
SQSTM1-204ENST00000453046 DSTQ03001 7570 aaKnown RBP6.72□□□□□ -1.33
SQSTM1-204ENST00000453046 PRAC1Q96KF2 57 aa6.69□□□□□ -1.34
SQSTM1-204ENST00000453046 MT1EP04732 61 aa6.68□□□□□ -1.34
SQSTM1-204ENST00000453046 LCE5AQ5TCM9 118 aa6.67□□□□□ -1.34
SQSTM1-204ENST00000453046 SVIPQ8NHG7 77 aa6.67□□□□□ -1.34
SQSTM1-204ENST00000453046 KRTAP19-3Q7Z4W3 81 aa6.66□□□□□ -1.34
SQSTM1-204ENST00000453046 KRTAP19-5Q3LI72 72 aa6.56□□□□□ -1.36
SQSTM1-204ENST00000453046 MT1GP13640 62 aa6.49□□□□□ -1.37
SQSTM1-204ENST00000453046 KRTAP12-3P60328 96 aa6.49□□□□□ -1.37
SQSTM1-204ENST00000453046 KRTAP4-9Q9BYQ8 210 aa6.47□□□□□ -1.37
SQSTM1-204ENST00000453046 GPR98Q8WXG9 6306 aa6.4□□□□□ -1.38
SQSTM1-204ENST00000453046 MT1MQ8N339 61 aa6.37□□□□□ -1.39
SQSTM1-204ENST00000453046 MT1LQ93083 61 aa6.37□□□□□ -1.39
SQSTM1-204ENST00000453046 KRTAP15-1Q3LI76 137 aa6.31□□□□□ -1.4
SQSTM1-204ENST00000453046 LCE1DQ5T752 114 aa6.3□□□□□ -1.4
SQSTM1-204ENST00000453046 LCE4AQ5TA78 99 aa6.28□□□□□ -1.4
SQSTM1-204ENST00000453046 MT4P47944 62 aa6.25□□□□□ -1.41
SQSTM1-204ENST00000453046 KRTAP4-3Q9BYR4 195 aa6.23□□□□□ -1.41
SQSTM1-204ENST00000453046 HMCN1Q96RW7 5635 aa6.22□□□□□ -1.41
SQSTM1-204ENST00000453046 KRTAP19-4Q3LI73 84 aa6.19□□□□□ -1.42
SQSTM1-204ENST00000453046 KRTAP5-4Q6L8H1 288 aa6.1□□□□□ -1.43
SQSTM1-204ENST00000453046 KRTAP4-7Q9BYR0 210 aa6.06□□□□□ -1.44
SQSTM1-204ENST00000453046 LCE3CQ5T5A8 94 aa6.03□□□□□ -1.44
SQSTM1-204ENST00000453046 KRTAP4-6Q9BYQ5 205 aa6.03□□□□□ -1.44
SQSTM1-204ENST00000453046 AHNAK2Q8IVF2 5795 aa6.02□□□□□ -1.45
SQSTM1-204ENST00000453046 KRTAP5-10Q6L8G5 202 aa5.87□□□□□ -1.47
SQSTM1-204ENST00000453046 SPRR5A0A1B0GTR4 108 aa5.86□□□□□ -1.47
SQSTM1-204ENST00000453046 KRTAP5-5Q701N2 237 aaPredicted RBP5.82□□□□□ -1.48
SQSTM1-204ENST00000453046 KRTAP20-2Q3LI61 65 aa5.79□□□□□ -1.48
SQSTM1-204ENST00000453046 KRTAP12-4P60329 112 aa5.76□□□□□ -1.49
SQSTM1-204ENST00000453046 LOC100996750A0A140TA64 210 aa5.75□□□□□ -1.49
SQSTM1-204ENST00000453046 KRTAP5-3Q6L8H2 238 aa5.74□□□□□ -1.49
SQSTM1-204ENST00000453046 SYNE1Q8NF91 8797 aaKnown RBP5.7□□□□□ -1.5
SQSTM1-204ENST00000453046 KRTAP9-6A8MVA2 160 aa5.67□□□□□ -1.5
SQSTM1-204ENST00000453046 KRTAP5-7Q6L8G8 165 aa5.66□□□□□ -1.5
SQSTM1-204ENST00000453046 LUZP6Q538Z0 58 aa5.55□□□□□ -1.52
SQSTM1-204ENST00000453046 MT1AP04731 61 aa5.42□□□□□ -1.54
SQSTM1-204ENST00000453046 KRTAP6-1Q3LI64 71 aa5.39□□□□□ -1.55
SQSTM1-204ENST00000453046 KRTAP5-2Q701N4 177 aa5.32□□□□□ -1.56
SQSTM1-204ENST00000453046 KRTAP4-11Q9BYQ6 195 aa5.32□□□□□ -1.56
SQSTM1-204ENST00000453046 H3BS24 57 aa5.31□□□□□ -1.56
SQSTM1-204ENST00000453046 KRTAP9-4Q9BYQ2 154 aa5.25□□□□□ -1.57
SQSTM1-204ENST00000453046 NDUFAF8A1L188 74 aa5.21□□□□□ -1.58
SQSTM1-204ENST00000453046 KRTAP6-2Q3LI66 62 aa5.19□□□□□ -1.58
SQSTM1-204ENST00000453046 OBSCNQ5VST9 7968 aa5.15□□□□□ -1.59
SQSTM1-204ENST00000453046 KRTAP5-8O75690 187 aa5.12□□□□□ -1.59
SQSTM1-204ENST00000453046 MUC5BQ9HC84 5762 aaPredicted RBP5□□□□□ -1.61
SQSTM1-204ENST00000453046 AHNAKQ09666 5890 aaKnown RBP4.99□□□□□ -1.61
SQSTM1-204ENST00000453046 MT3P25713 68 aa4.99□□□□□ -1.61
SQSTM1-204ENST00000453046 MUC5ACP98088 5654 aa4.94□□□□□ -1.62
SQSTM1-204ENST00000453046 KRTAP9-9Q9BYP9 154 aa4.92□□□□□ -1.62
SQSTM1-204ENST00000453046 KRTAP5-1Q6L8H4 278 aa4.8□□□□□ -1.64
SQSTM1-204ENST00000453046 A0A0A0MQY5 61 aa4.78□□□□□ -1.64
SQSTM1-204ENST00000453046 LCE1EQ5T753 118 aa4.57□□□□□ -1.68
SQSTM1-204ENST00000453046 LCE3DQ9BYE3 92 aa4.49□□□□□ -1.69
SQSTM1-204ENST00000453046 LCE1BQ5T7P3 118 aa4.37□□□□□ -1.71
SQSTM1-204ENST00000453046 INE1O15225 51 aa4.35□□□□□ -1.71
SQSTM1-204ENST00000453046 LCE3EQ5T5B0 92 aa4.35□□□□□ -1.71
SQSTM1-204ENST00000453046 KRTAP4-2Q9BYR5 136 aa4.32□□□□□ -1.72
SQSTM1-204ENST00000453046 LCE1CQ5T751 118 aa4.25□□□□□ -1.73
SQSTM1-204ENST00000453046 KRTAP4-12Q9BQ66 201 aa3.99□□□□□ -1.77
SQSTM1-204ENST00000453046 KRTAP5-11Q6L8G4 156 aa3.85□□□□□ -1.79
SQSTM1-204ENST00000453046 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.83□□□□□ -1.8
SQSTM1-204ENST00000453046 LCE1FQ5T754 118 aa3.78□□□□□ -1.8
SQSTM1-204ENST00000453046 PRM1P04553 51 aa3.69□□□□□ -1.82
SQSTM1-204ENST00000453046 KRTAP21-2Q3LI59 83 aa3.54□□□□□ -1.84
SQSTM1-204ENST00000453046 PHGR1C9JFL3 82 aa3.46□□□□□ -1.86
SQSTM1-204ENST00000453046 KRTAP4-4Q9BYR3 166 aa3.29□□□□□ -1.88
SQSTM1-204ENST00000453046 MUC19Q7Z5P9 8384 aa3.16□□□□□ -1.9
SQSTM1-204ENST00000453046 KRTAP21-1Q3LI58 79 aa2.62□□□□□ -1.99
SQSTM1-204ENST00000453046 MUC16Q8WXI7 14507 aa2.14□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 5.8 ms