RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 C10orf95Q9H7T3 257 aa4.58□□□□□ -1.68
SCN9A-204ENST00000452182 KMT2DO14686 5537 aa4.56□□□□□ -1.68
SCN9A-204ENST00000452182 KRTAP6-3Q3LI67 103 aa4.54□□□□□ -1.68
SCN9A-204ENST00000452182 KRTAP2-2Q9BYT5 123 aa4.54□□□□□ -1.68
SCN9A-204ENST00000452182 TNP1P09430 55 aa4.51□□□□□ -1.69
SCN9A-204ENST00000452182 KRTAP8-1Q8IUC2 63 aa4.5□□□□□ -1.69
SCN9A-204ENST00000452182 KRTAP5-9P26371 169 aa4.49□□□□□ -1.69
SCN9A-204ENST00000452182 BRK1Q8WUW1 75 aa4.44□□□□□ -1.7
SCN9A-204ENST00000452182 KRTAP25-1Q3LHN0 102 aa4.43□□□□□ -1.7
SCN9A-204ENST00000452182 ROMO1P60602 79 aa4.39□□□□□ -1.71
SCN9A-204ENST00000452182 SPRR2FQ96RM1 72 aa4.39□□□□□ -1.71
SCN9A-204ENST00000452182 MUC12Q9UKN1 5478 aa4.39□□□□□ -1.71
SCN9A-204ENST00000452182 LCE3AQ5TA76 89 aa4.35□□□□□ -1.71
SCN9A-204ENST00000452182 KRTAP19-7Q3SYF9 63 aa4.33□□□□□ -1.72
SCN9A-204ENST00000452182 MDN1Q9NU22 5596 aa4.33□□□□□ -1.72
SCN9A-204ENST00000452182 NEBP20929 6669 aa4.3□□□□□ -1.72
SCN9A-204ENST00000452182 KRTAP19-5Q3LI72 72 aa4.29□□□□□ -1.72
SCN9A-204ENST00000452182 MT1EP04732 61 aa4.28□□□□□ -1.72
SCN9A-204ENST00000452182 SPRR2EP22531 72 aa4.24□□□□□ -1.73
SCN9A-204ENST00000452182 SPRR2BP35325 72 aa4.24□□□□□ -1.73
SCN9A-204ENST00000452182 SPRR2AP35326 72 aa4.24□□□□□ -1.73
SCN9A-204ENST00000452182 LCE1FQ5T754 118 aa4.24□□□□□ -1.73
SCN9A-204ENST00000452182 PP632Q6XCG6 107 aa4.22□□□□□ -1.73
SCN9A-204ENST00000452182 KRTAP12-3P60328 96 aa4.21□□□□□ -1.73
SCN9A-204ENST00000452182 PRO0628Q9UI54 55 aa4.21□□□□□ -1.73
SCN9A-204ENST00000452182 PMAIP1Q13794 54 aa4.21□□□□□ -1.74
SCN9A-204ENST00000452182 KRTAP19-3Q7Z4W3 81 aa4.17□□□□□ -1.74
SCN9A-204ENST00000452182 MT1LQ93083 61 aa4.14□□□□□ -1.75
SCN9A-204ENST00000452182 MT1GP13640 62 aa4.13□□□□□ -1.75
SCN9A-204ENST00000452182 SPRR2DP22532 72 aa4.1□□□□□ -1.75
SCN9A-204ENST00000452182 MT1MQ8N339 61 aa4.04□□□□□ -1.76
SCN9A-204ENST00000452182 KRTAP2-3P0C7H8 128 aa4.03□□□□□ -1.77
SCN9A-204ENST00000452182 KRTAP20-1Q3LI63 56 aa4.03□□□□□ -1.77
SCN9A-204ENST00000452182 KRTAP2-4Q9BYR9 128 aa4.03□□□□□ -1.77
SCN9A-204ENST00000452182 LCE3CQ5T5A8 94 aa3.94□□□□□ -1.78
SCN9A-204ENST00000452182 KTN1-AS1Q86SY8 53 aa3.94□□□□□ -1.78
SCN9A-204ENST00000452182 DSTQ03001 7570 aaKnown RBP3.94□□□□□ -1.78
SCN9A-204ENST00000452182 KRTAP2-1Q9BYU5 128 aa3.92□□□□□ -1.78
SCN9A-204ENST00000452182 KRTAP4-3Q9BYR4 195 aa3.91□□□□□ -1.78
SCN9A-204ENST00000452182 LCE1EQ5T753 118 aa3.89□□□□□ -1.79
SCN9A-204ENST00000452182 KRTAP5-5Q701N2 237 aaPredicted RBP3.7□□□□□ -1.82
SCN9A-204ENST00000452182 KRTAP9-6A8MVA2 160 aa3.68□□□□□ -1.82
SCN9A-204ENST00000452182 KRTAP5-4Q6L8H1 288 aa3.68□□□□□ -1.82
SCN9A-204ENST00000452182 KRTAP5-11Q6L8G4 156 aa3.62□□□□□ -1.83
SCN9A-204ENST00000452182 SPRR5A0A1B0GTR4 108 aa3.61□□□□□ -1.83
SCN9A-204ENST00000452182 LCE3EQ5T5B0 92 aa3.59□□□□□ -1.83
SCN9A-204ENST00000452182 MT4P47944 62 aa3.55□□□□□ -1.84
SCN9A-204ENST00000452182 MT1AP04731 61 aa3.53□□□□□ -1.84
SCN9A-204ENST00000452182 SYNE1Q8NF91 8797 aaKnown RBP3.52□□□□□ -1.85
SCN9A-204ENST00000452182 HMCN1Q96RW7 5635 aa3.52□□□□□ -1.85
SCN9A-204ENST00000452182 KRTAP12-4P60329 112 aa3.5□□□□□ -1.85
SCN9A-204ENST00000452182 KRTAP6-1Q3LI64 71 aa3.48□□□□□ -1.85
SCN9A-204ENST00000452182 KRTAP20-2Q3LI61 65 aa3.44□□□□□ -1.86
SCN9A-204ENST00000452182 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.43□□□□□ -1.86
SCN9A-204ENST00000452182 LUZP6Q538Z0 58 aa3.3□□□□□ -1.88
SCN9A-204ENST00000452182 KRTAP5-2Q701N4 177 aa3.29□□□□□ -1.88
SCN9A-204ENST00000452182 KRTAP6-2Q3LI66 62 aa3.26□□□□□ -1.89
SCN9A-204ENST00000452182 AHNAK2Q8IVF2 5795 aa3.25□□□□□ -1.89
SCN9A-204ENST00000452182 GPR98Q8WXG9 6306 aa3.22□□□□□ -1.89
SCN9A-204ENST00000452182 KRTAP5-10Q6L8G5 202 aa3.15□□□□□ -1.9
SCN9A-204ENST00000452182 LCE3DQ9BYE3 92 aa3.05□□□□□ -1.92
SCN9A-204ENST00000452182 OBSCNQ5VST9 7968 aa3.02□□□□□ -1.93
SCN9A-204ENST00000452182 KRTAP5-7Q6L8G8 165 aa2.99□□□□□ -1.93
SCN9A-204ENST00000452182 KRTAP5-1Q6L8H4 278 aa2.98□□□□□ -1.93
SCN9A-204ENST00000452182 KRTAP5-8O75690 187 aa2.95□□□□□ -1.94
SCN9A-204ENST00000452182 KRTAP4-4Q9BYR3 166 aa2.86□□□□□ -1.95
SCN9A-204ENST00000452182 MUC5ACP98088 5654 aa2.77□□□□□ -1.97
SCN9A-204ENST00000452182 LCE1CQ5T751 118 aa2.68□□□□□ -1.98
SCN9A-204ENST00000452182 LCE1BQ5T7P3 118 aa2.68□□□□□ -1.98
SCN9A-204ENST00000452182 MUC5BQ9HC84 5762 aaPredicted RBP2.63□□□□□ -1.99
SCN9A-204ENST00000452182 AHNAKQ09666 5890 aaKnown RBP2.57□□□□□ -2
SCN9A-204ENST00000452182 INE1O15225 51 aa2.48□□□□□ -2.01
SCN9A-204ENST00000452182 KRTAP21-2Q3LI59 83 aa2.3□□□□□ -2.04
SCN9A-204ENST00000452182 PRM1P04553 51 aa2.25□□□□□ -2.05
SCN9A-204ENST00000452182 PHGR1C9JFL3 82 aa2.06□□□□□ -2.08
SCN9A-204ENST00000452182 MUC19Q7Z5P9 8384 aa1.99□□□□□ -2.09
SCN9A-204ENST00000452182 KRTAP21-1Q3LI58 79 aa1.37□□□□□ -2.19
SCN9A-204ENST00000452182 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 267 ms