RNA–Protein interactions for RNA: ENST00000450251.5

USP53-202, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP53, Length 6,072 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-202ENST00000450251 FAT1Q14517 4588 aa0.87□□□□□ -2.27
USP53-202ENST00000450251 PKD1P98161 4303 aa0.86□□□□□ -2.27
USP53-202ENST00000450251 MUC19Q7Z5P9 8384 aa0.86□□□□□ -2.27
USP53-202ENST00000450251 LCE3CQ5T5A8 94 aa0.85□□□□□ -2.27
USP53-202ENST00000450251 FAT2Q9NYQ8 4349 aa0.85□□□□□ -2.27
USP53-202ENST00000450251 SPRR2GQ9BYE4 73 aa0.85□□□□□ -2.27
USP53-202ENST00000450251 LRP1Q07954 4544 aaKnown RBP0.84□□□□□ -2.27
USP53-202ENST00000450251 NEBP20929 6669 aa0.84□□□□□ -2.28
USP53-202ENST00000450251 MT3P25713 68 aa0.84□□□□□ -2.28
USP53-202ENST00000450251 AHNAKQ09666 5890 aaKnown RBP0.83□□□□□ -2.28
USP53-202ENST00000450251 MDN1Q9NU22 5596 aa0.82□□□□□ -2.28
USP53-202ENST00000450251 KRTAP5-1Q6L8H4 278 aa0.82□□□□□ -2.28
USP53-202ENST00000450251 DNAH8Q96JB1 4490 aa0.82□□□□□ -2.28
USP53-202ENST00000450251 LRP2P98164 4655 aa0.82□□□□□ -2.28
USP53-202ENST00000450251 KRTAP4-4Q9BYR3 166 aa0.82□□□□□ -2.28
USP53-202ENST00000450251 KRTAP19-2Q3LHN2 52 aa0.81□□□□□ -2.28
USP53-202ENST00000450251 KRTAP6-3Q3LI67 103 aa0.81□□□□□ -2.28
USP53-202ENST00000450251 KRTAP10-5P60370 271 aa0.81□□□□□ -2.28
USP53-202ENST00000450251 CRCT1Q9UGL9 99 aa0.81□□□□□ -2.28
USP53-202ENST00000450251 KMT2DO14686 5537 aa0.8□□□□□ -2.28
USP53-202ENST00000450251 KRTAP19-6Q3LI70 58 aa0.8□□□□□ -2.28
USP53-202ENST00000450251 FCGBPQ9Y6R7 5405 aaPredicted RBP0.8□□□□□ -2.28
USP53-202ENST00000450251 LCE3EQ5T5B0 92 aa0.79□□□□□ -2.28
USP53-202ENST00000450251 KRTAP19-8Q3LI54 63 aa0.78□□□□□ -2.28
USP53-202ENST00000450251 KRTAP19-5Q3LI72 72 aa0.78□□□□□ -2.29
USP53-202ENST00000450251 FLGP20930 4061 aaPredicted RBP0.77□□□□□ -2.29
USP53-202ENST00000450251 AHNAK2Q8IVF2 5795 aa0.77□□□□□ -2.29
USP53-202ENST00000450251 MUC17Q685J3 4493 aa0.77□□□□□ -2.29
USP53-202ENST00000450251 KRTAP12-4P60329 112 aa0.77□□□□□ -2.29
USP53-202ENST00000450251 MACF1Q9UPN3 7388 aaKnown RBP0.76□□□□□ -2.29
USP53-202ENST00000450251 SYNE1Q8NF91 8797 aaKnown RBP0.76□□□□□ -2.29
USP53-202ENST00000450251 KRTAP2-3P0C7H8 128 aa0.76□□□□□ -2.29
USP53-202ENST00000450251 KRTAP2-4Q9BYR9 128 aa0.76□□□□□ -2.29
USP53-202ENST00000450251 KRTAP2-1Q9BYU5 128 aa0.76□□□□□ -2.29
USP53-202ENST00000450251 DSTQ03001 7570 aaKnown RBP0.74□□□□□ -2.29
USP53-202ENST00000450251 MT2AP02795 61 aa0.73□□□□□ -2.29
USP53-202ENST00000450251 MT1EP04732 61 aa0.73□□□□□ -2.29
USP53-202ENST00000450251 MT1XP80297 61 aa0.73□□□□□ -2.29
USP53-202ENST00000450251 LCE3DQ9BYE3 92 aa0.73□□□□□ -2.29
USP53-202ENST00000450251 MT1HP80294 61 aa0.72□□□□□ -2.29
USP53-202ENST00000450251 KRTAP4-1Q9BYQ7 146 aa0.72□□□□□ -2.29
USP53-202ENST00000450251 MT1LQ93083 61 aa0.71□□□□□ -2.3
USP53-202ENST00000450251 MT1AP04731 61 aa0.71□□□□□ -2.3
USP53-202ENST00000450251 KRTAP10-7P60409 375 aaPredicted RBP0.71□□□□□ -2.3
USP53-202ENST00000450251 MT1FP04733 61 aa0.7□□□□□ -2.3
USP53-202ENST00000450251 PRM1P04553 51 aa0.7□□□□□ -2.3
USP53-202ENST00000450251 SPRR2AP35326 72 aa0.69□□□□□ -2.3
USP53-202ENST00000450251 MT1BP07438 61 aa0.69□□□□□ -2.3
USP53-202ENST00000450251 KRTAP9-6A8MVA2 160 aa0.69□□□□□ -2.3
USP53-202ENST00000450251 MT1GP13640 62 aa0.69□□□□□ -2.3
USP53-202ENST00000450251 SPRR2BP35325 72 aa0.68□□□□□ -2.3
USP53-202ENST00000450251 KRTAP20-1Q3LI63 56 aa0.68□□□□□ -2.3
USP53-202ENST00000450251 KRTAP5-7Q6L8G8 165 aa0.68□□□□□ -2.3
USP53-202ENST00000450251 SPRR2FQ96RM1 72 aa0.68□□□□□ -2.3
USP53-202ENST00000450251 MUC5ACP98088 5654 aa0.66□□□□□ -2.3
USP53-202ENST00000450251 SYNE2Q8WXH0 6885 aaKnown RBP0.66□□□□□ -2.3
USP53-202ENST00000450251 MUC12Q9UKN1 5478 aa0.65□□□□□ -2.3
USP53-202ENST00000450251 KRTAP19-3Q7Z4W3 81 aa0.64□□□□□ -2.31
USP53-202ENST00000450251 LCE1EQ5T753 118 aa0.64□□□□□ -2.31
USP53-202ENST00000450251 SPRR2DP22532 72 aa0.64□□□□□ -2.31
USP53-202ENST00000450251 MT1MQ8N339 61 aa0.64□□□□□ -2.31
USP53-202ENST00000450251 LPAP08519 4548 aa0.63□□□□□ -2.31
USP53-202ENST00000450251 FSIP2Q5CZC0 6907 aa0.63□□□□□ -2.31
USP53-202ENST00000450251 SPRR2EP22531 72 aa0.62□□□□□ -2.31
USP53-202ENST00000450251 KRTAP6-2Q3LI66 62 aa0.61□□□□□ -2.31
USP53-202ENST00000450251 KRTAP5-10Q6L8G5 202 aa0.6□□□□□ -2.31
USP53-202ENST00000450251 KRTAP19-7Q3SYF9 63 aa0.6□□□□□ -2.31
USP53-202ENST00000450251 KRTAP4-3Q9BYR4 195 aa0.55□□□□□ -2.32
USP53-202ENST00000450251 KRTAP6-1Q3LI64 71 aa0.54□□□□□ -2.32
USP53-202ENST00000450251 KRTAP20-2Q3LI61 65 aa0.49□□□□□ -2.33
USP53-202ENST00000450251 LCE1BQ5T7P3 118 aa0.48□□□□□ -2.33
USP53-202ENST00000450251 LCE1CQ5T751 118 aa0.44□□□□□ -2.34
USP53-202ENST00000450251 MT4P47944 62 aa0.43□□□□□ -2.34
USP53-202ENST00000450251 KRTAP21-1Q3LI58 79 aa0.41□□□□□ -2.34
USP53-202ENST00000450251 KRTAP21-2Q3LI59 83 aa0.41□□□□□ -2.34
USP53-202ENST00000450251 PHGR1C9JFL3 82 aa0.33□□□□□ -2.36
USP53-202ENST00000450251 MUC16Q8WXI7 14507 aa0.3□□□□□ -2.36
Retrieved 77 of 20,778 RNA–protein pairs in 11.9 ms