RNA–Protein interactions for RNA: ENST00000447873.5

SGCE-207, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-207ENST00000447873 PRAC1Q96KF2 57 aa7.29□□□□□ -1.24
SGCE-207ENST00000447873 KRTAP5-9P26371 169 aa7.28□□□□□ -1.24
SGCE-207ENST00000447873 SPRR2FQ96RM1 72 aa7.28□□□□□ -1.24
SGCE-207ENST00000447873 KRTAP9-7A8MTY7 169 aa7.26□□□□□ -1.25
SGCE-207ENST00000447873 KRTAP19-7Q3SYF9 63 aa7.26□□□□□ -1.25
SGCE-207ENST00000447873 KRTAP12-3P60328 96 aa7.21□□□□□ -1.25
SGCE-207ENST00000447873 KRTAP4-11Q9BYQ6 195 aa7.17□□□□□ -1.26
SGCE-207ENST00000447873 MT1EP04732 61 aa7.16□□□□□ -1.26
SGCE-207ENST00000447873 KRTAP5-3Q6L8H2 238 aa7.16□□□□□ -1.26
SGCE-207ENST00000447873 MUC12Q9UKN1 5478 aa7.14□□□□□ -1.27
SGCE-207ENST00000447873 MDN1Q9NU22 5596 aa7.06□□□□□ -1.28
SGCE-207ENST00000447873 SPRR2EP22531 72 aa6.99□□□□□ -1.29
SGCE-207ENST00000447873 SPRR2BP35325 72 aa6.99□□□□□ -1.29
SGCE-207ENST00000447873 SPRR2AP35326 72 aa6.99□□□□□ -1.29
SGCE-207ENST00000447873 KRTAP15-1Q3LI76 137 aa6.99□□□□□ -1.29
SGCE-207ENST00000447873 LCE1AQ5T7P2 110 aa6.97□□□□□ -1.29
SGCE-207ENST00000447873 MT1LQ93083 61 aa6.97□□□□□ -1.29
SGCE-207ENST00000447873 KRTAP19-3Q7Z4W3 81 aa6.96□□□□□ -1.29
SGCE-207ENST00000447873 H3BS24 57 aa6.95□□□□□ -1.3
SGCE-207ENST00000447873 NEBP20929 6669 aa6.9□□□□□ -1.31
SGCE-207ENST00000447873 MT1GP13640 62 aa6.87□□□□□ -1.31
SGCE-207ENST00000447873 LCE5AQ5TCM9 118 aa6.86□□□□□ -1.31
SGCE-207ENST00000447873 KRTAP19-4Q3LI73 84 aa6.8□□□□□ -1.32
SGCE-207ENST00000447873 MT1MQ8N339 61 aa6.77□□□□□ -1.33
SGCE-207ENST00000447873 SPRR2DP22532 72 aa6.74□□□□□ -1.33
SGCE-207ENST00000447873 LCE4AQ5TA78 99 aa6.73□□□□□ -1.33
SGCE-207ENST00000447873 LCE3CQ5T5A8 94 aa6.71□□□□□ -1.34
SGCE-207ENST00000447873 KRTAP4-3Q9BYR4 195 aa6.61□□□□□ -1.35
SGCE-207ENST00000447873 DSTQ03001 7570 aaKnown RBP6.6□□□□□ -1.35
SGCE-207ENST00000447873 KRTAP2-3P0C7H8 128 aa6.46□□□□□ -1.38
SGCE-207ENST00000447873 KRTAP2-4Q9BYR9 128 aa6.46□□□□□ -1.38
SGCE-207ENST00000447873 KRTAP20-1Q3LI63 56 aa6.44□□□□□ -1.38
SGCE-207ENST00000447873 SPRR5A0A1B0GTR4 108 aa6.35□□□□□ -1.39
SGCE-207ENST00000447873 KRTAP9-6A8MVA2 160 aa6.31□□□□□ -1.4
SGCE-207ENST00000447873 KRTAP2-2Q9BYT5 123 aa6.31□□□□□ -1.4
SGCE-207ENST00000447873 KRTAP2-1Q9BYU5 128 aa6.31□□□□□ -1.4
SGCE-207ENST00000447873 KRTAP5-5Q701N2 237 aaPredicted RBP6.12□□□□□ -1.43
SGCE-207ENST00000447873 LUZP6Q538Z0 58 aa6.04□□□□□ -1.44
SGCE-207ENST00000447873 KRTAP5-4Q6L8H1 288 aa6□□□□□ -1.45
SGCE-207ENST00000447873 MT1AP04731 61 aa5.93□□□□□ -1.46
SGCE-207ENST00000447873 KRTAP6-1Q3LI64 71 aa5.88□□□□□ -1.47
SGCE-207ENST00000447873 MT4P47944 62 aa5.86□□□□□ -1.47
SGCE-207ENST00000447873 SYNE1Q8NF91 8797 aaKnown RBP5.86□□□□□ -1.47
SGCE-207ENST00000447873 KRTAP12-4P60329 112 aa5.8□□□□□ -1.48
SGCE-207ENST00000447873 HMCN1Q96RW7 5635 aa5.72□□□□□ -1.49
SGCE-207ENST00000447873 KRTAP20-2Q3LI61 65 aa5.63□□□□□ -1.51
SGCE-207ENST00000447873 NDUFAF8A1L188 74 aa5.63□□□□□ -1.51
SGCE-207ENST00000447873 KRTAP6-2Q3LI66 62 aa5.47□□□□□ -1.53
SGCE-207ENST00000447873 MT3P25713 68 aa5.41□□□□□ -1.54
SGCE-207ENST00000447873 KRTAP5-2Q701N4 177 aa5.38□□□□□ -1.55
SGCE-207ENST00000447873 A0A0A0MQY5 61 aa5.36□□□□□ -1.55
SGCE-207ENST00000447873 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.26□□□□□ -1.57
SGCE-207ENST00000447873 AHNAK2Q8IVF2 5795 aa5.21□□□□□ -1.58
SGCE-207ENST00000447873 OBSCNQ5VST9 7968 aa5.07□□□□□ -1.6
SGCE-207ENST00000447873 GPR98Q8WXG9 6306 aa5.01□□□□□ -1.61
SGCE-207ENST00000447873 LCE3DQ9BYE3 92 aa4.99□□□□□ -1.61
SGCE-207ENST00000447873 KRTAP5-10Q6L8G5 202 aa4.99□□□□□ -1.61
SGCE-207ENST00000447873 LCE3EQ5T5B0 92 aa4.82□□□□□ -1.64
SGCE-207ENST00000447873 KRTAP5-11Q6L8G4 156 aa4.82□□□□□ -1.64
SGCE-207ENST00000447873 KRTAP5-8O75690 187 aa4.77□□□□□ -1.65
SGCE-207ENST00000447873 LCE1EQ5T753 118 aa4.76□□□□□ -1.65
SGCE-207ENST00000447873 KRTAP5-1Q6L8H4 278 aa4.7□□□□□ -1.66
SGCE-207ENST00000447873 KRTAP5-7Q6L8G8 165 aa4.68□□□□□ -1.66
SGCE-207ENST00000447873 INE1O15225 51 aa4.63□□□□□ -1.67
SGCE-207ENST00000447873 MUC5ACP98088 5654 aa4.58□□□□□ -1.68
SGCE-207ENST00000447873 LCE1BQ5T7P3 118 aa4.48□□□□□ -1.69
SGCE-207ENST00000447873 LCE1CQ5T751 118 aa4.43□□□□□ -1.7
SGCE-207ENST00000447873 KRTAP4-4Q9BYR3 166 aa4.35□□□□□ -1.71
SGCE-207ENST00000447873 MUC5BQ9HC84 5762 aaPredicted RBP4.21□□□□□ -1.74
SGCE-207ENST00000447873 AHNAKQ09666 5890 aaKnown RBP4.07□□□□□ -1.76
SGCE-207ENST00000447873 PRM1P04553 51 aa4.06□□□□□ -1.76
SGCE-207ENST00000447873 KRTAP21-2Q3LI59 83 aa3.85□□□□□ -1.79
SGCE-207ENST00000447873 LCE1FQ5T754 118 aa3.75□□□□□ -1.81
SGCE-207ENST00000447873 PHGR1C9JFL3 82 aa3.38□□□□□ -1.87
SGCE-207ENST00000447873 MUC19Q7Z5P9 8384 aa3.07□□□□□ -1.92
SGCE-207ENST00000447873 KRTAP21-1Q3LI58 79 aa2.4□□□□□ -2.03
SGCE-207ENST00000447873 MUC16Q8WXI7 14507 aa2.15□□□□□ -2.06
Retrieved 77 of 20,778 RNA–protein pairs in 66.8 ms