RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 SPRR5A0A1B0GTR4 108 aa2.89□□□□□ -1.95
LIMCH1-204ENST00000446625 CHKB-CPT1BH3BT56 60 aa2.89□□□□□ -1.95
LIMCH1-204ENST00000446625 KRTAP5-4Q6L8H1 288 aa2.87□□□□□ -1.95
LIMCH1-204ENST00000446625 SMIM26A0A096LP01 95 aa2.86□□□□□ -1.95
LIMCH1-204ENST00000446625 SPTSSBQ8NFR3 76 aa2.85□□□□□ -1.95
LIMCH1-204ENST00000446625 MT1GP13640 62 aa2.83□□□□□ -1.96
LIMCH1-204ENST00000446625 Q1T7F1 81 aa2.82□□□□□ -1.96
LIMCH1-204ENST00000446625 LINC01558Q9Y6Z2 57 aa2.82□□□□□ -1.96
LIMCH1-204ENST00000446625 MT1MQ8N339 61 aa2.8□□□□□ -1.96
LIMCH1-204ENST00000446625 V9GYY9 64 aa2.8□□□□□ -1.96
LIMCH1-204ENST00000446625 PP632Q6XCG6 107 aa2.79□□□□□ -1.96
LIMCH1-204ENST00000446625 A0A1B0GU69 56 aa2.77□□□□□ -1.97
LIMCH1-204ENST00000446625 PRR15LQ9BU68 103 aa2.77□□□□□ -1.97
LIMCH1-204ENST00000446625 PSPHP1O15172 72 aa2.76□□□□□ -1.97
LIMCH1-204ENST00000446625 KRTAP4-3Q9BYR4 195 aa2.76□□□□□ -1.97
LIMCH1-204ENST00000446625 SEC61GP60059 68 aa2.75□□□□□ -1.97
LIMCH1-204ENST00000446625 KRTAP19-5Q3LI72 72 aa2.75□□□□□ -1.97
LIMCH1-204ENST00000446625 KRTAP20-2Q3LI61 65 aa2.73□□□□□ -1.97
LIMCH1-204ENST00000446625 AHNAKQ09666 5890 aaKnown RBP2.72□□□□□ -1.97
LIMCH1-204ENST00000446625 A0A1B0GU33 70 aa2.71□□□□□ -1.98
LIMCH1-204ENST00000446625 MT1LQ93083 61 aa2.71□□□□□ -1.98
LIMCH1-204ENST00000446625 KRTAP13-4Q3LI77 160 aa2.7□□□□□ -1.98
LIMCH1-204ENST00000446625 CAMK2N1Q7Z7J9 78 aa2.7□□□□□ -1.98
LIMCH1-204ENST00000446625 UQCR11O14957 56 aa2.68□□□□□ -1.98
LIMCH1-204ENST00000446625 A0A0D9SG42 100 aa2.67□□□□□ -1.98
LIMCH1-204ENST00000446625 SPATA8Q6RVD6 105 aa2.67□□□□□ -1.98
LIMCH1-204ENST00000446625 A6NED7 52 aa2.66□□□□□ -1.98
LIMCH1-204ENST00000446625 MIR22HGQ0VDD5 57 aa2.65□□□□□ -1.99
LIMCH1-204ENST00000446625 MUC5ACP98088 5654 aa2.64□□□□□ -1.99
LIMCH1-204ENST00000446625 MUC5BQ9HC84 5762 aaPredicted RBP2.64□□□□□ -1.99
LIMCH1-204ENST00000446625 A8MU10 97 aa2.63□□□□□ -1.99
LIMCH1-204ENST00000446625 CDC42SE1Q9NRR8 79 aa2.63□□□□□ -1.99
LIMCH1-204ENST00000446625 SYNE1Q8NF91 8797 aaKnown RBP2.63□□□□□ -1.99
LIMCH1-204ENST00000446625 KRTAP12-4P60329 112 aa2.6□□□□□ -1.99
LIMCH1-204ENST00000446625 BRK1Q8WUW1 75 aa2.6□□□□□ -1.99
LIMCH1-204ENST00000446625 KRTAP12-1P59990 96 aa2.59□□□□□ -1.99
LIMCH1-204ENST00000446625 KRTAP5-5Q701N2 237 aaPredicted RBP2.59□□□□□ -1.99
LIMCH1-204ENST00000446625 SPINT4Q6UDR6 99 aa2.58□□□□□ -2
LIMCH1-204ENST00000446625 MT3P25713 68 aa2.56□□□□□ -2
LIMCH1-204ENST00000446625 A0A0A0MQY5 61 aa2.55□□□□□ -2
LIMCH1-204ENST00000446625 KRTAP5-11Q6L8G4 156 aa2.54□□□□□ -2
LIMCH1-204ENST00000446625 C10orf95Q9H7T3 257 aa2.54□□□□□ -2
LIMCH1-204ENST00000446625 KRTAP5-8O75690 187 aa2.53□□□□□ -2
LIMCH1-204ENST00000446625 PRO0628Q9UI54 55 aa2.53□□□□□ -2
LIMCH1-204ENST00000446625 K7ERS5 55 aa2.51□□□□□ -2.01
LIMCH1-204ENST00000446625 LCE1EQ5T753 118 aa2.5□□□□□ -2.01
LIMCH1-204ENST00000446625 LCE3AQ5TA76 89 aa2.5□□□□□ -2.01
LIMCH1-204ENST00000446625 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.49□□□□□ -2.01
LIMCH1-204ENST00000446625 PMAIP1Q13794 54 aa2.45□□□□□ -2.02
LIMCH1-204ENST00000446625 KRTAP5-2Q701N4 177 aa2.45□□□□□ -2.02
LIMCH1-204ENST00000446625 ROMO1P60602 79 aa2.43□□□□□ -2.02
LIMCH1-204ENST00000446625 TNP1P09430 55 aa2.4□□□□□ -2.03
LIMCH1-204ENST00000446625 KRTAP12-3P60328 96 aa2.4□□□□□ -2.03
LIMCH1-204ENST00000446625 OBSCNQ5VST9 7968 aa2.39□□□□□ -2.03
LIMCH1-204ENST00000446625 KRTAP25-1Q3LHN0 102 aa2.36□□□□□ -2.03
LIMCH1-204ENST00000446625 KTN1-AS1Q86SY8 53 aa2.35□□□□□ -2.03
LIMCH1-204ENST00000446625 LCE1FQ5T754 118 aa2.33□□□□□ -2.04
LIMCH1-204ENST00000446625 KRTAP6-1Q3LI64 71 aa2.32□□□□□ -2.04
LIMCH1-204ENST00000446625 PRAC1Q96KF2 57 aa2.32□□□□□ -2.04
LIMCH1-204ENST00000446625 MT1AP04731 61 aa2.3□□□□□ -2.04
LIMCH1-204ENST00000446625 KRTAP6-2Q3LI66 62 aa2.29□□□□□ -2.04
LIMCH1-204ENST00000446625 KRTAP5-1Q6L8H4 278 aa2.27□□□□□ -2.05
LIMCH1-204ENST00000446625 KRTAP9-6A8MVA2 160 aa2.21□□□□□ -2.06
LIMCH1-204ENST00000446625 LCE3CQ5T5A8 94 aa2.19□□□□□ -2.06
LIMCH1-204ENST00000446625 NDUFAF8A1L188 74 aa2.12□□□□□ -2.07
LIMCH1-204ENST00000446625 KRTAP4-4Q9BYR3 166 aa2.08□□□□□ -2.08
LIMCH1-204ENST00000446625 LCE3EQ5T5B0 92 aa1.99□□□□□ -2.09
LIMCH1-204ENST00000446625 LCE1BQ5T7P3 118 aa1.96□□□□□ -2.1
LIMCH1-204ENST00000446625 LCE1CQ5T751 118 aa1.88□□□□□ -2.11
LIMCH1-204ENST00000446625 LUZP6Q538Z0 58 aa1.85□□□□□ -2.11
LIMCH1-204ENST00000446625 PHGR1C9JFL3 82 aa1.79□□□□□ -2.12
LIMCH1-204ENST00000446625 LCE3DQ9BYE3 92 aa1.6□□□□□ -2.15
LIMCH1-204ENST00000446625 MUC19Q7Z5P9 8384 aa1.53□□□□□ -2.16
LIMCH1-204ENST00000446625 KRTAP21-2Q3LI59 83 aa1.53□□□□□ -2.16
LIMCH1-204ENST00000446625 INE1O15225 51 aa1.48□□□□□ -2.17
LIMCH1-204ENST00000446625 KRTAP21-1Q3LI58 79 aa1.35□□□□□ -2.19
LIMCH1-204ENST00000446625 PRM1P04553 51 aa1.26□□□□□ -2.21
LIMCH1-204ENST00000446625 MUC16Q8WXI7 14507 aa1.02□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 57.7 ms