RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 KRTAP12-3P60328 96 aa7.64□□□□□ -1.19
CHD3-204ENST00000439235 PRAC1Q96KF2 57 aa7.64□□□□□ -1.19
CHD3-204ENST00000439235 MT1EP04732 61 aa7.61□□□□□ -1.19
CHD3-204ENST00000439235 SPRR2EP22531 72 aa7.58□□□□□ -1.2
CHD3-204ENST00000439235 SPRR2BP35325 72 aa7.58□□□□□ -1.2
CHD3-204ENST00000439235 SPRR2AP35326 72 aa7.58□□□□□ -1.2
CHD3-204ENST00000439235 KRTAP2-2Q9BYT5 123 aa7.58□□□□□ -1.2
CHD3-204ENST00000439235 KRTAP2-1Q9BYU5 128 aa7.58□□□□□ -1.2
CHD3-204ENST00000439235 LCE1AQ5T7P2 110 aa7.42□□□□□ -1.22
CHD3-204ENST00000439235 KRTAP15-1Q3LI76 137 aa7.4□□□□□ -1.22
CHD3-204ENST00000439235 KRTAP19-3Q7Z4W3 81 aa7.4□□□□□ -1.22
CHD3-204ENST00000439235 MT1LQ93083 61 aa7.4□□□□□ -1.22
CHD3-204ENST00000439235 GPR98Q8WXG9 6306 aa7.37□□□□□ -1.23
CHD3-204ENST00000439235 SPRR2DP22532 72 aa7.33□□□□□ -1.24
CHD3-204ENST00000439235 SVIPQ8NHG7 77 aa7.31□□□□□ -1.24
CHD3-204ENST00000439235 MT1GP13640 62 aa7.3□□□□□ -1.24
CHD3-204ENST00000439235 LCE5AQ5TCM9 118 aa7.29□□□□□ -1.24
CHD3-204ENST00000439235 KRTAP19-4Q3LI73 84 aa7.27□□□□□ -1.25
CHD3-204ENST00000439235 MT1MQ8N339 61 aa7.19□□□□□ -1.26
CHD3-204ENST00000439235 LCE3BQ5TA77 95 aa7.18□□□□□ -1.26
CHD3-204ENST00000439235 LCE3CQ5T5A8 94 aa7.1□□□□□ -1.27
CHD3-204ENST00000439235 KRTAP4-7Q9BYR0 210 aa7.05□□□□□ -1.28
CHD3-204ENST00000439235 DSTQ03001 7570 aaKnown RBP7□□□□□ -1.29
CHD3-204ENST00000439235 KRTAP4-3Q9BYR4 195 aa6.97□□□□□ -1.29
CHD3-204ENST00000439235 KRTAP4-9Q9BYQ8 210 aa6.91□□□□□ -1.3
CHD3-204ENST00000439235 SPRR5A0A1B0GTR4 108 aa6.73□□□□□ -1.33
CHD3-204ENST00000439235 KRTAP9-6A8MVA2 160 aa6.64□□□□□ -1.35
CHD3-204ENST00000439235 LOC100996750A0A140TA64 210 aa6.63□□□□□ -1.35
CHD3-204ENST00000439235 LCE1DQ5T752 114 aa6.62□□□□□ -1.35
CHD3-204ENST00000439235 HMCN1Q96RW7 5635 aa6.55□□□□□ -1.36
CHD3-204ENST00000439235 AHNAK2Q8IVF2 5795 aa6.52□□□□□ -1.37
CHD3-204ENST00000439235 KRTAP5-5Q701N2 237 aaPredicted RBP6.51□□□□□ -1.37
CHD3-204ENST00000439235 MT4P47944 62 aa6.49□□□□□ -1.37
CHD3-204ENST00000439235 KRTAP5-10Q6L8G5 202 aa6.48□□□□□ -1.37
CHD3-204ENST00000439235 LCE4AQ5TA78 99 aa6.4□□□□□ -1.38
CHD3-204ENST00000439235 KRTAP5-4Q6L8H1 288 aa6.4□□□□□ -1.38
CHD3-204ENST00000439235 LUZP6Q538Z0 58 aa6.38□□□□□ -1.39
CHD3-204ENST00000439235 MT1AP04731 61 aa6.32□□□□□ -1.4
CHD3-204ENST00000439235 KRTAP5-7Q6L8G8 165 aa6.31□□□□□ -1.4
CHD3-204ENST00000439235 KRTAP4-6Q9BYQ5 205 aa6.22□□□□□ -1.41
CHD3-204ENST00000439235 KRTAP6-1Q3LI64 71 aa6.21□□□□□ -1.42
CHD3-204ENST00000439235 KRTAP12-4P60329 112 aa6.18□□□□□ -1.42
CHD3-204ENST00000439235 KRTAP5-3Q6L8H2 238 aa6.18□□□□□ -1.42
CHD3-204ENST00000439235 SYNE1Q8NF91 8797 aaKnown RBP6.07□□□□□ -1.44
CHD3-204ENST00000439235 KRTAP9-4Q9BYQ2 154 aa6.01□□□□□ -1.45
CHD3-204ENST00000439235 KRTAP20-2Q3LI61 65 aa6□□□□□ -1.45
CHD3-204ENST00000439235 NDUFAF8A1L188 74 aa5.89□□□□□ -1.47
CHD3-204ENST00000439235 KRTAP6-2Q3LI66 62 aa5.79□□□□□ -1.48
CHD3-204ENST00000439235 MT3P25713 68 aa5.76□□□□□ -1.49
CHD3-204ENST00000439235 KRTAP5-2Q701N4 177 aa5.74□□□□□ -1.49
CHD3-204ENST00000439235 AHNAKQ09666 5890 aaKnown RBP5.57□□□□□ -1.52
CHD3-204ENST00000439235 KRTAP4-11Q9BYQ6 195 aa5.53□□□□□ -1.52
CHD3-204ENST00000439235 MUC5ACP98088 5654 aa5.52□□□□□ -1.53
CHD3-204ENST00000439235 MUC5BQ9HC84 5762 aaPredicted RBP5.44□□□□□ -1.54
CHD3-204ENST00000439235 KRTAP5-8O75690 187 aa5.39□□□□□ -1.55
CHD3-204ENST00000439235 LCE3DQ9BYE3 92 aa5.28□□□□□ -1.56
CHD3-204ENST00000439235 KRTAP9-9Q9BYP9 154 aa5.23□□□□□ -1.57
CHD3-204ENST00000439235 OBSCNQ5VST9 7968 aa5.19□□□□□ -1.58
CHD3-204ENST00000439235 A0A0A0MQY5 61 aa5.14□□□□□ -1.59
CHD3-204ENST00000439235 LCE3EQ5T5B0 92 aa5.1□□□□□ -1.59
CHD3-204ENST00000439235 LCE1EQ5T753 118 aa5.09□□□□□ -1.59
CHD3-204ENST00000439235 KRTAP5-1Q6L8H4 278 aa5□□□□□ -1.61
CHD3-204ENST00000439235 INE1O15225 51 aa4.9□□□□□ -1.63
CHD3-204ENST00000439235 LCE1BQ5T7P3 118 aa4.74□□□□□ -1.65
CHD3-204ENST00000439235 LCE1CQ5T751 118 aa4.72□□□□□ -1.65
CHD3-204ENST00000439235 KRTAP4-2Q9BYR5 136 aa4.72□□□□□ -1.65
CHD3-204ENST00000439235 H3BS24 57 aa4.48□□□□□ -1.69
CHD3-204ENST00000439235 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.38□□□□□ -1.71
CHD3-204ENST00000439235 PRM1P04553 51 aa4.26□□□□□ -1.73
CHD3-204ENST00000439235 KRTAP4-12Q9BQ66 201 aa4.23□□□□□ -1.73
CHD3-204ENST00000439235 KRTAP5-11Q6L8G4 156 aa4.21□□□□□ -1.74
CHD3-204ENST00000439235 KRTAP21-2Q3LI59 83 aa4.07□□□□□ -1.76
CHD3-204ENST00000439235 LCE1FQ5T754 118 aa3.91□□□□□ -1.78
CHD3-204ENST00000439235 PHGR1C9JFL3 82 aa3.84□□□□□ -1.79
CHD3-204ENST00000439235 KRTAP4-4Q9BYR3 166 aa3.61□□□□□ -1.83
CHD3-204ENST00000439235 MUC19Q7Z5P9 8384 aa3.21□□□□□ -1.9
CHD3-204ENST00000439235 KRTAP21-1Q3LI58 79 aa2.91□□□□□ -1.94
CHD3-204ENST00000439235 MUC16Q8WXI7 14507 aa2.3□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 11.7 ms