RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 KRTAP2-2Q9BYT5 123 aa4.41□□□□□ -1.7
LINC00539-203ENST00000434601 KRTAP2-1Q9BYU5 128 aa4.41□□□□□ -1.7
LINC00539-203ENST00000434601 KRTAP23-1A1A580 65 aa4.39□□□□□ -1.71
LINC00539-203ENST00000434601 PP632Q6XCG6 107 aa4.38□□□□□ -1.71
LINC00539-203ENST00000434601 LCE1AQ5T7P2 110 aa4.37□□□□□ -1.71
LINC00539-203ENST00000434601 LCE3AQ5TA76 89 aa4.37□□□□□ -1.71
LINC00539-203ENST00000434601 SPRR2DP22532 72 aa4.33□□□□□ -1.72
LINC00539-203ENST00000434601 H3BS24 57 aa4.31□□□□□ -1.72
LINC00539-203ENST00000434601 KRTAP4-8A0A0G2JLE6 195 aa4.3□□□□□ -1.72
LINC00539-203ENST00000434601 KRTAP4-12Q9BQ66 201 aa4.3□□□□□ -1.72
LINC00539-203ENST00000434601 LCE3BQ5TA77 95 aa4.23□□□□□ -1.73
LINC00539-203ENST00000434601 KRTAP12-3P60328 96 aa4.2□□□□□ -1.74
LINC00539-203ENST00000434601 KRTAP19-5Q3LI72 72 aa4.2□□□□□ -1.74
LINC00539-203ENST00000434601 KRTAP19-7Q3SYF9 63 aa4.17□□□□□ -1.74
LINC00539-203ENST00000434601 KRTAP9-9Q9BYP9 154 aa4.13□□□□□ -1.75
LINC00539-203ENST00000434601 KRTAP9-4Q9BYQ2 154 aa4.13□□□□□ -1.75
LINC00539-203ENST00000434601 MT1EP04732 61 aa4.12□□□□□ -1.75
LINC00539-203ENST00000434601 KRTAP15-1Q3LI76 137 aa4.09□□□□□ -1.75
LINC00539-203ENST00000434601 DSTQ03001 7570 aaKnown RBP4.05□□□□□ -1.76
LINC00539-203ENST00000434601 MT1LQ93083 61 aa4.02□□□□□ -1.77
LINC00539-203ENST00000434601 LCE4AQ5TA78 99 aa4.01□□□□□ -1.77
LINC00539-203ENST00000434601 GPR98Q8WXG9 6306 aa4.01□□□□□ -1.77
LINC00539-203ENST00000434601 LCE5AQ5TCM9 118 aa3.98□□□□□ -1.77
LINC00539-203ENST00000434601 KRTAP19-4Q3LI73 84 aa3.97□□□□□ -1.77
LINC00539-203ENST00000434601 KRTAP19-3Q7Z4W3 81 aa3.97□□□□□ -1.77
LINC00539-203ENST00000434601 KRTAP4-9Q9BYQ8 210 aa3.95□□□□□ -1.78
LINC00539-203ENST00000434601 LCE1DQ5T752 114 aa3.92□□□□□ -1.78
LINC00539-203ENST00000434601 MT1GP13640 62 aa3.91□□□□□ -1.78
LINC00539-203ENST00000434601 LCE3CQ5T5A8 94 aa3.9□□□□□ -1.79
LINC00539-203ENST00000434601 MT1MQ8N339 61 aa3.88□□□□□ -1.79
LINC00539-203ENST00000434601 KRTAP4-7Q9BYR0 210 aa3.85□□□□□ -1.79
LINC00539-203ENST00000434601 SPRR5A0A1B0GTR4 108 aa3.84□□□□□ -1.79
LINC00539-203ENST00000434601 MT4P47944 62 aa3.79□□□□□ -1.8
LINC00539-203ENST00000434601 HMCN1Q96RW7 5635 aa3.78□□□□□ -1.8
LINC00539-203ENST00000434601 KRTAP4-3Q9BYR4 195 aa3.77□□□□□ -1.81
LINC00539-203ENST00000434601 KRTAP5-4Q6L8H1 288 aa3.7□□□□□ -1.82
LINC00539-203ENST00000434601 KRTAP4-2Q9BYR5 136 aa3.7□□□□□ -1.82
LINC00539-203ENST00000434601 KRTAP4-11Q9BYQ6 195 aa3.69□□□□□ -1.82
LINC00539-203ENST00000434601 KRTAP9-6A8MVA2 160 aa3.68□□□□□ -1.82
LINC00539-203ENST00000434601 KRTAP5-10Q6L8G5 202 aa3.68□□□□□ -1.82
LINC00539-203ENST00000434601 AHNAK2Q8IVF2 5795 aa3.67□□□□□ -1.82
LINC00539-203ENST00000434601 LUZP6Q538Z0 58 aa3.67□□□□□ -1.82
LINC00539-203ENST00000434601 KRTAP5-7Q6L8G8 165 aa3.59□□□□□ -1.83
LINC00539-203ENST00000434601 KRTAP5-3Q6L8H2 238 aa3.56□□□□□ -1.84
LINC00539-203ENST00000434601 NDUFAF8A1L188 74 aa3.51□□□□□ -1.85
LINC00539-203ENST00000434601 KRTAP5-5Q701N2 237 aaPredicted RBP3.51□□□□□ -1.85
LINC00539-203ENST00000434601 KRTAP20-2Q3LI61 65 aa3.5□□□□□ -1.85
LINC00539-203ENST00000434601 KRTAP12-4P60329 112 aa3.47□□□□□ -1.85
LINC00539-203ENST00000434601 MT1AP04731 61 aa3.43□□□□□ -1.86
LINC00539-203ENST00000434601 SYNE1Q8NF91 8797 aaKnown RBP3.38□□□□□ -1.87
LINC00539-203ENST00000434601 KRTAP6-1Q3LI64 71 aa3.37□□□□□ -1.87
LINC00539-203ENST00000434601 KRTAP5-2Q701N4 177 aa3.2□□□□□ -1.9
LINC00539-203ENST00000434601 KRTAP5-8O75690 187 aa3.14□□□□□ -1.91
LINC00539-203ENST00000434601 KRTAP6-2Q3LI66 62 aa3.12□□□□□ -1.91
LINC00539-203ENST00000434601 OBSCNQ5VST9 7968 aa3.1□□□□□ -1.91
LINC00539-203ENST00000434601 AHNAKQ09666 5890 aaKnown RBP3.09□□□□□ -1.91
LINC00539-203ENST00000434601 MT3P25713 68 aa3.09□□□□□ -1.91
LINC00539-203ENST00000434601 MUC5BQ9HC84 5762 aaPredicted RBP3.07□□□□□ -1.92
LINC00539-203ENST00000434601 A0A0A0MQY5 61 aa3.07□□□□□ -1.92
LINC00539-203ENST00000434601 MUC5ACP98088 5654 aa3.07□□□□□ -1.92
LINC00539-203ENST00000434601 LCE3DQ9BYE3 92 aa2.92□□□□□ -1.94
LINC00539-203ENST00000434601 INE1O15225 51 aa2.91□□□□□ -1.94
LINC00539-203ENST00000434601 KRTAP5-1Q6L8H4 278 aa2.9□□□□□ -1.95
LINC00539-203ENST00000434601 LCE3EQ5T5B0 92 aa2.83□□□□□ -1.96
LINC00539-203ENST00000434601 LCE1EQ5T753 118 aa2.75□□□□□ -1.97
LINC00539-203ENST00000434601 LCE1BQ5T7P3 118 aa2.57□□□□□ -2
LINC00539-203ENST00000434601 LCE1CQ5T751 118 aa2.55□□□□□ -2
LINC00539-203ENST00000434601 KRTAP5-11Q6L8G4 156 aa2.51□□□□□ -2.01
LINC00539-203ENST00000434601 PRM1P04553 51 aa2.45□□□□□ -2.02
LINC00539-203ENST00000434601 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.43□□□□□ -2.02
LINC00539-203ENST00000434601 LCE1FQ5T754 118 aa2.4□□□□□ -2.03
LINC00539-203ENST00000434601 KRTAP21-2Q3LI59 83 aa2.21□□□□□ -2.06
LINC00539-203ENST00000434601 PHGR1C9JFL3 82 aa2.16□□□□□ -2.06
LINC00539-203ENST00000434601 KRTAP4-4Q9BYR3 166 aa2.04□□□□□ -2.08
LINC00539-203ENST00000434601 MUC19Q7Z5P9 8384 aa1.9□□□□□ -2.1
LINC00539-203ENST00000434601 KRTAP21-1Q3LI58 79 aa1.67□□□□□ -2.14
LINC00539-203ENST00000434601 MUC16Q8WXI7 14507 aa1.32□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 75.7 ms