RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 LCE3BQ5TA77 95 aa6.8□□□□□ -1.32
SHH-202ENST00000430104 LCE5AQ5TCM9 118 aa6.77□□□□□ -1.33
SHH-202ENST00000430104 KRTAP25-1Q3LHN0 102 aa6.68□□□□□ -1.34
SHH-202ENST00000430104 MT1GP13640 62 aa6.67□□□□□ -1.34
SHH-202ENST00000430104 MT1LQ93083 61 aa6.65□□□□□ -1.34
SHH-202ENST00000430104 PP632Q6XCG6 107 aa6.62□□□□□ -1.35
SHH-202ENST00000430104 KRTAP12-3P60328 96 aa6.59□□□□□ -1.35
SHH-202ENST00000430104 MT1MQ8N339 61 aa6.58□□□□□ -1.36
SHH-202ENST00000430104 CDC42SE1Q9NRR8 79 aa6.53□□□□□ -1.36
SHH-202ENST00000430104 DSTQ03001 7570 aaKnown RBP6.5□□□□□ -1.37
SHH-202ENST00000430104 KRTAP4-3Q9BYR4 195 aa6.46□□□□□ -1.38
SHH-202ENST00000430104 ROMO1P60602 79 aa6.44□□□□□ -1.38
SHH-202ENST00000430104 KRTAP23-1A1A580 65 aa6.39□□□□□ -1.39
SHH-202ENST00000430104 KRTAP4-7Q9BYR0 210 aa6.39□□□□□ -1.39
SHH-202ENST00000430104 KRTAP4-9Q9BYQ8 210 aa6.29□□□□□ -1.4
SHH-202ENST00000430104 KRTAP15-1Q3LI76 137 aa6.24□□□□□ -1.41
SHH-202ENST00000430104 LCE4AQ5TA78 99 aa6.18□□□□□ -1.42
SHH-202ENST00000430104 MT4P47944 62 aa6.15□□□□□ -1.42
SHH-202ENST00000430104 KRTAP19-4Q3LI73 84 aa6.14□□□□□ -1.43
SHH-202ENST00000430104 LCE1DQ5T752 114 aa6.14□□□□□ -1.43
SHH-202ENST00000430104 BRK1Q8WUW1 75 aa6.13□□□□□ -1.43
SHH-202ENST00000430104 LCE3CQ5T5A8 94 aa6.09□□□□□ -1.43
SHH-202ENST00000430104 KRTAP5-4Q6L8H1 288 aa6.08□□□□□ -1.44
SHH-202ENST00000430104 LOC100996750A0A140TA64 210 aa6.04□□□□□ -1.44
SHH-202ENST00000430104 KRTAP4-6Q9BYQ5 205 aa5.97□□□□□ -1.45
SHH-202ENST00000430104 KRTAP5-5Q701N2 237 aaPredicted RBP5.96□□□□□ -1.46
SHH-202ENST00000430104 SVIPQ8NHG7 77 aa5.96□□□□□ -1.46
SHH-202ENST00000430104 HMCN1Q96RW7 5635 aa5.91□□□□□ -1.46
SHH-202ENST00000430104 KRTAP12-4P60329 112 aa5.79□□□□□ -1.48
SHH-202ENST00000430104 PMAIP1Q13794 54 aa5.76□□□□□ -1.49
SHH-202ENST00000430104 KRTAP20-2Q3LI61 65 aa5.76□□□□□ -1.49
SHH-202ENST00000430104 KRTAP9-6A8MVA2 160 aa5.74□□□□□ -1.49
SHH-202ENST00000430104 SPRR5A0A1B0GTR4 108 aa5.72□□□□□ -1.49
SHH-202ENST00000430104 GPR98Q8WXG9 6306 aa5.71□□□□□ -1.5
SHH-202ENST00000430104 MT1AP04731 61 aa5.66□□□□□ -1.5
SHH-202ENST00000430104 SYNE1Q8NF91 8797 aaKnown RBP5.66□□□□□ -1.5
SHH-202ENST00000430104 KRTAP6-1Q3LI64 71 aa5.64□□□□□ -1.51
SHH-202ENST00000430104 AHNAK2Q8IVF2 5795 aa5.62□□□□□ -1.51
SHH-202ENST00000430104 KRTAP5-3Q6L8H2 238 aa5.56□□□□□ -1.52
SHH-202ENST00000430104 KRTAP5-10Q6L8G5 202 aa5.54□□□□□ -1.52
SHH-202ENST00000430104 PRAC1Q96KF2 57 aa5.53□□□□□ -1.52
SHH-202ENST00000430104 PRO0628Q9UI54 55 aa5.47□□□□□ -1.53
SHH-202ENST00000430104 KRTAP9-4Q9BYQ2 154 aa5.46□□□□□ -1.54
SHH-202ENST00000430104 KRTAP5-2Q701N4 177 aa5.36□□□□□ -1.55
SHH-202ENST00000430104 KRTAP6-2Q3LI66 62 aa5.34□□□□□ -1.55
SHH-202ENST00000430104 KRTAP5-7Q6L8G8 165 aa5.29□□□□□ -1.56
SHH-202ENST00000430104 KTN1-AS1Q86SY8 53 aa5.2□□□□□ -1.58
SHH-202ENST00000430104 KRTAP4-11Q9BYQ6 195 aa5.19□□□□□ -1.58
SHH-202ENST00000430104 MT3P25713 68 aa5.17□□□□□ -1.58
SHH-202ENST00000430104 KRTAP5-8O75690 187 aa5.01□□□□□ -1.61
SHH-202ENST00000430104 OBSCNQ5VST9 7968 aa4.94□□□□□ -1.62
SHH-202ENST00000430104 KRTAP5-1Q6L8H4 278 aa4.78□□□□□ -1.64
SHH-202ENST00000430104 KRTAP9-9Q9BYP9 154 aa4.73□□□□□ -1.65
SHH-202ENST00000430104 LCE1EQ5T753 118 aa4.64□□□□□ -1.67
SHH-202ENST00000430104 H3BS24 57 aa4.62□□□□□ -1.67
SHH-202ENST00000430104 LUZP6Q538Z0 58 aa4.61□□□□□ -1.67
SHH-202ENST00000430104 MUC5ACP98088 5654 aa4.57□□□□□ -1.68
SHH-202ENST00000430104 MUC5BQ9HC84 5762 aaPredicted RBP4.53□□□□□ -1.68
SHH-202ENST00000430104 AHNAKQ09666 5890 aaKnown RBP4.5□□□□□ -1.69
SHH-202ENST00000430104 LCE1BQ5T7P3 118 aa4.46□□□□□ -1.7
SHH-202ENST00000430104 LCE3DQ9BYE3 92 aa4.44□□□□□ -1.7
SHH-202ENST00000430104 KRTAP4-2Q9BYR5 136 aa4.4□□□□□ -1.71
SHH-202ENST00000430104 A0A0A0MQY5 61 aa4.37□□□□□ -1.71
SHH-202ENST00000430104 LCE1CQ5T751 118 aa4.32□□□□□ -1.72
SHH-202ENST00000430104 LCE3EQ5T5B0 92 aa4.22□□□□□ -1.73
SHH-202ENST00000430104 KRTAP4-12Q9BQ66 201 aa3.97□□□□□ -1.77
SHH-202ENST00000430104 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.94□□□□□ -1.78
SHH-202ENST00000430104 NDUFAF8A1L188 74 aa3.91□□□□□ -1.78
SHH-202ENST00000430104 KRTAP5-11Q6L8G4 156 aa3.89□□□□□ -1.79
SHH-202ENST00000430104 LCE1FQ5T754 118 aa3.71□□□□□ -1.82
SHH-202ENST00000430104 KRTAP21-2Q3LI59 83 aa3.68□□□□□ -1.82
SHH-202ENST00000430104 KRTAP4-4Q9BYR3 166 aa3.41□□□□□ -1.86
SHH-202ENST00000430104 PHGR1C9JFL3 82 aa3.36□□□□□ -1.87
SHH-202ENST00000430104 PRM1P04553 51 aa3.33□□□□□ -1.88
SHH-202ENST00000430104 INE1O15225 51 aa3.12□□□□□ -1.91
SHH-202ENST00000430104 MUC19Q7Z5P9 8384 aa3.01□□□□□ -1.93
SHH-202ENST00000430104 KRTAP21-1Q3LI58 79 aa2.43□□□□□ -2.02
SHH-202ENST00000430104 MUC16Q8WXI7 14507 aa2.16□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 154.3 ms