RNA–Protein interactions for RNA: ENST00000428555.1

TRIM39-208, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-208ENST00000428555 LCE5AQ5TCM9 118 aa3.81□□□□□ -1.8
TRIM39-208ENST00000428555 LINC01558Q9Y6Z2 57 aa3.81□□□□□ -1.8
TRIM39-208ENST00000428555 KRTAP15-1Q3LI76 137 aa3.79□□□□□ -1.8
TRIM39-208ENST00000428555 KRTAP2-3P0C7H8 128 aa3.78□□□□□ -1.8
TRIM39-208ENST00000428555 KRTAP4-7Q9BYR0 210 aa3.78□□□□□ -1.8
TRIM39-208ENST00000428555 KRTAP2-4Q9BYR9 128 aa3.78□□□□□ -1.8
TRIM39-208ENST00000428555 KRTAP10-12P60413 245 aa3.77□□□□□ -1.81
TRIM39-208ENST00000428555 KRTAP13-4Q3LI77 160 aa3.77□□□□□ -1.81
TRIM39-208ENST00000428555 LCE1AQ5T7P2 110 aa3.77□□□□□ -1.81
TRIM39-208ENST00000428555 COA5Q86WW8 74 aa3.75□□□□□ -1.81
TRIM39-208ENST00000428555 UQCR11O14957 56 aa3.74□□□□□ -1.81
TRIM39-208ENST00000428555 SPINT4Q6UDR6 99 aa3.74□□□□□ -1.81
TRIM39-208ENST00000428555 SPRR2DP22532 72 aa3.68□□□□□ -1.82
TRIM39-208ENST00000428555 KRTAP4-9Q9BYQ8 210 aa3.68□□□□□ -1.82
TRIM39-208ENST00000428555 A0A0D9SG42 100 aa3.67□□□□□ -1.82
TRIM39-208ENST00000428555 SPATA8Q6RVD6 105 aa3.67□□□□□ -1.82
TRIM39-208ENST00000428555 KRTAP2-2Q9BYT5 123 aa3.65□□□□□ -1.83
TRIM39-208ENST00000428555 KRTAP2-1Q9BYU5 128 aa3.65□□□□□ -1.83
TRIM39-208ENST00000428555 KRTAP4-2Q9BYR5 136 aa3.61□□□□□ -1.83
TRIM39-208ENST00000428555 KRTAP4-11Q9BYQ6 195 aa3.59□□□□□ -1.83
TRIM39-208ENST00000428555 KRTAP12-1P59990 96 aa3.58□□□□□ -1.84
TRIM39-208ENST00000428555 KRTAP19-7Q3SYF9 63 aa3.56□□□□□ -1.84
TRIM39-208ENST00000428555 A0A1B0GU69 56 aa3.55□□□□□ -1.84
TRIM39-208ENST00000428555 MT1EP04732 61 aa3.52□□□□□ -1.85
TRIM39-208ENST00000428555 KRTAP19-3Q7Z4W3 81 aa3.49□□□□□ -1.85
TRIM39-208ENST00000428555 GPR98Q8WXG9 6306 aa3.49□□□□□ -1.85
TRIM39-208ENST00000428555 INE1O15225 51 aa3.48□□□□□ -1.85
TRIM39-208ENST00000428555 KRTAP19-5Q3LI72 72 aa3.48□□□□□ -1.85
TRIM39-208ENST00000428555 DSTQ03001 7570 aaKnown RBP3.44□□□□□ -1.86
TRIM39-208ENST00000428555 C10orf95Q9H7T3 257 aa3.44□□□□□ -1.86
TRIM39-208ENST00000428555 KRTAP5-3Q6L8H2 238 aa3.43□□□□□ -1.86
TRIM39-208ENST00000428555 MT1GP13640 62 aa3.41□□□□□ -1.86
TRIM39-208ENST00000428555 TNP1P09430 55 aa3.4□□□□□ -1.87
TRIM39-208ENST00000428555 LCE3AQ5TA76 89 aa3.39□□□□□ -1.87
TRIM39-208ENST00000428555 MT1LQ93083 61 aa3.37□□□□□ -1.87
TRIM39-208ENST00000428555 PP632Q6XCG6 107 aa3.36□□□□□ -1.87
TRIM39-208ENST00000428555 MT1MQ8N339 61 aa3.35□□□□□ -1.87
TRIM39-208ENST00000428555 KRTAP4-3Q9BYR4 195 aa3.31□□□□□ -1.88
TRIM39-208ENST00000428555 HMCN1Q96RW7 5635 aa3.27□□□□□ -1.89
TRIM39-208ENST00000428555 KRTAP12-3P60328 96 aa3.26□□□□□ -1.89
TRIM39-208ENST00000428555 MT3P25713 68 aa3.25□□□□□ -1.89
TRIM39-208ENST00000428555 MT4P47944 62 aa3.23□□□□□ -1.89
TRIM39-208ENST00000428555 KRTAP5-4Q6L8H1 288 aa3.19□□□□□ -1.9
TRIM39-208ENST00000428555 AHNAK2Q8IVF2 5795 aa3.14□□□□□ -1.91
TRIM39-208ENST00000428555 KRTAP5-5Q701N2 237 aaPredicted RBP3.07□□□□□ -1.92
TRIM39-208ENST00000428555 KRTAP5-10Q6L8G5 202 aa3.02□□□□□ -1.93
TRIM39-208ENST00000428555 KRTAP20-2Q3LI61 65 aa3.01□□□□□ -1.93
TRIM39-208ENST00000428555 LCE3CQ5T5A8 94 aa3.01□□□□□ -1.93
TRIM39-208ENST00000428555 SYNE1Q8NF91 8797 aaKnown RBP3.01□□□□□ -1.93
TRIM39-208ENST00000428555 KRTAP12-4P60329 112 aa3□□□□□ -1.93
TRIM39-208ENST00000428555 SPRR5A0A1B0GTR4 108 aa2.99□□□□□ -1.93
TRIM39-208ENST00000428555 KRTAP5-7Q6L8G8 165 aa2.91□□□□□ -1.94
TRIM39-208ENST00000428555 KRTAP6-1Q3LI64 71 aa2.86□□□□□ -1.95
TRIM39-208ENST00000428555 KRTAP9-6A8MVA2 160 aa2.85□□□□□ -1.95
TRIM39-208ENST00000428555 MT1AP04731 61 aa2.85□□□□□ -1.95
TRIM39-208ENST00000428555 LCE1FQ5T754 118 aa2.84□□□□□ -1.95
TRIM39-208ENST00000428555 KRTAP5-2Q701N4 177 aa2.79□□□□□ -1.96
TRIM39-208ENST00000428555 KRTAP6-2Q3LI66 62 aa2.73□□□□□ -1.97
TRIM39-208ENST00000428555 OBSCNQ5VST9 7968 aa2.67□□□□□ -1.98
TRIM39-208ENST00000428555 KRTAP5-8O75690 187 aa2.66□□□□□ -1.98
TRIM39-208ENST00000428555 AHNAKQ09666 5890 aaKnown RBP2.64□□□□□ -1.99
TRIM39-208ENST00000428555 LCE1EQ5T753 118 aa2.64□□□□□ -1.99
TRIM39-208ENST00000428555 MUC5BQ9HC84 5762 aaPredicted RBP2.6□□□□□ -1.99
TRIM39-208ENST00000428555 MUC5ACP98088 5654 aa2.58□□□□□ -2
TRIM39-208ENST00000428555 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.52□□□□□ -2.01
TRIM39-208ENST00000428555 KRTAP5-1Q6L8H4 278 aa2.51□□□□□ -2.01
TRIM39-208ENST00000428555 LCE3EQ5T5B0 92 aa2.36□□□□□ -2.03
TRIM39-208ENST00000428555 KRTAP5-11Q6L8G4 156 aa2.34□□□□□ -2.03
TRIM39-208ENST00000428555 LCE1BQ5T7P3 118 aa2.29□□□□□ -2.04
TRIM39-208ENST00000428555 LCE1CQ5T751 118 aa2.23□□□□□ -2.05
TRIM39-208ENST00000428555 LCE3DQ9BYE3 92 aa2.2□□□□□ -2.06
TRIM39-208ENST00000428555 KRTAP4-4Q9BYR3 166 aa2.07□□□□□ -2.08
TRIM39-208ENST00000428555 KRTAP21-2Q3LI59 83 aa1.88□□□□□ -2.11
TRIM39-208ENST00000428555 PHGR1C9JFL3 82 aa1.76□□□□□ -2.13
TRIM39-208ENST00000428555 PRM1P04553 51 aa1.7□□□□□ -2.14
TRIM39-208ENST00000428555 MUC19Q7Z5P9 8384 aa1.65□□□□□ -2.14
TRIM39-208ENST00000428555 KRTAP21-1Q3LI58 79 aa1.33□□□□□ -2.2
TRIM39-208ENST00000428555 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 70.9 ms