RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 LCE1BQ5T7P3 118 aa1.11□□□□□ -2.23
CCDC88A-205ENST00000426576 HIST1H2BDP58876 126 aa1.11□□□□□ -2.23
CCDC88A-205ENST00000426576 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.11□□□□□ -2.23
CCDC88A-205ENST00000426576 KRTAP13-1Q8IUC0 172 aa1.11□□□□□ -2.23
CCDC88A-205ENST00000426576 HIST1H2BHQ93079 126 aa1.11□□□□□ -2.23
CCDC88A-205ENST00000426576 HIST1H2BNQ99877 126 aa1.11□□□□□ -2.23
CCDC88A-205ENST00000426576 HIST1H2BMQ99879 126 aa1.11□□□□□ -2.23
CCDC88A-205ENST00000426576 PSPHP1O15172 72 aa1.1□□□□□ -2.23
CCDC88A-205ENST00000426576 KRTAP12-2P59991 146 aa1.09□□□□□ -2.23
CCDC88A-205ENST00000426576 OCR1Q9BZK8 76 aa1.09□□□□□ -2.23
CCDC88A-205ENST00000426576 CYP4F30PQ9H0H9 118 aa1.09□□□□□ -2.24
CCDC88A-205ENST00000426576 F8W1H4 67 aa1.08□□□□□ -2.24
CCDC88A-205ENST00000426576 KRTAP7-1Q8IUC3 87 aa1.08□□□□□ -2.24
CCDC88A-205ENST00000426576 SSPOA2VEC9 5147 aa1.07□□□□□ -2.24
CCDC88A-205ENST00000426576 LCE3AQ5TA76 89 aa1.07□□□□□ -2.24
CCDC88A-205ENST00000426576 K7ERJ3 54 aa1.06□□□□□ -2.24
CCDC88A-205ENST00000426576 COA6Q5JTJ3 125 aaKnown RBP1.06□□□□□ -2.24
CCDC88A-205ENST00000426576 PRAC1Q96KF2 57 aa1.06□□□□□ -2.24
CCDC88A-205ENST00000426576 PMAIP1Q13794 54 aa1.06□□□□□ -2.24
CCDC88A-205ENST00000426576 KRTAP4-1Q9BYQ7 146 aa1.06□□□□□ -2.24
CCDC88A-205ENST00000426576 USH2AO75445 5202 aa1.06□□□□□ -2.24
CCDC88A-205ENST00000426576 LINC00472Q9H8W2 130 aa1.05□□□□□ -2.24
CCDC88A-205ENST00000426576 MT1GP13640 62 aa1.05□□□□□ -2.24
CCDC88A-205ENST00000426576 Q1T7F1 81 aa1.05□□□□□ -2.24
CCDC88A-205ENST00000426576 MIR22HGQ0VDD5 57 aa1.04□□□□□ -2.24
CCDC88A-205ENST00000426576 DLEU1O43261 78 aa1.04□□□□□ -2.24
CCDC88A-205ENST00000426576 TSPEAR-AS2P59090 65 aa1.04□□□□□ -2.24
CCDC88A-205ENST00000426576 LOC110117498A0A087WWA1 95 aa1.03□□□□□ -2.24
CCDC88A-205ENST00000426576 A0A1B0GV90 55 aa1.03□□□□□ -2.24
CCDC88A-205ENST00000426576 YPEL4Q96NS1 127 aa1.02□□□□□ -2.25
CCDC88A-205ENST00000426576 SPANXA2-OT1Q8N9U9 137 aa1.02□□□□□ -2.25
CCDC88A-205ENST00000426576 LINC00643Q86TS7 51 aa1.01□□□□□ -2.25
CCDC88A-205ENST00000426576 ROMO1P60602 79 aa1.01□□□□□ -2.25
CCDC88A-205ENST00000426576 KRTAP12-3P60328 96 aa1.01□□□□□ -2.25
CCDC88A-205ENST00000426576 KRTAP9-6A8MVA2 160 aa1□□□□□ -2.25
CCDC88A-205ENST00000426576 KTN1-AS1Q86SY8 53 aa0.99□□□□□ -2.25
CCDC88A-205ENST00000426576 COA5Q86WW8 74 aa0.99□□□□□ -2.25
CCDC88A-205ENST00000426576 ANAPC13Q9BS18 74 aa0.99□□□□□ -2.25
CCDC88A-205ENST00000426576 MT1BP07438 61 aa0.99□□□□□ -2.25
CCDC88A-205ENST00000426576 KRTAP19-3Q7Z4W3 81 aa0.99□□□□□ -2.25
CCDC88A-205ENST00000426576 FXYD2P54710 66 aa0.99□□□□□ -2.25
CCDC88A-205ENST00000426576 KRTAP13-4Q3LI77 160 aa0.98□□□□□ -2.25
CCDC88A-205ENST00000426576 MT3P25713 68 aa0.96□□□□□ -2.26
CCDC88A-205ENST00000426576 NDUFAF8A1L188 74 aa0.94□□□□□ -2.26
CCDC88A-205ENST00000426576 PHGR1C9JFL3 82 aa0.94□□□□□ -2.26
CCDC88A-205ENST00000426576 ATP5EP56381 51 aaPredicted RBP0.93□□□□□ -2.26
CCDC88A-205ENST00000426576 SPRR2GQ9BYE4 73 aa0.93□□□□□ -2.26
CCDC88A-205ENST00000426576 A0A096LNJ9 63 aa0.91□□□□□ -2.26
CCDC88A-205ENST00000426576 CCDC179H3BU77 68 aa0.9□□□□□ -2.27
CCDC88A-205ENST00000426576 KRTAP19-5Q3LI72 72 aa0.9□□□□□ -2.27
CCDC88A-205ENST00000426576 KRTAP19-8Q3LI54 63 aa0.89□□□□□ -2.27
CCDC88A-205ENST00000426576 PYY3Q5JQD4 70 aa0.88□□□□□ -2.27
CCDC88A-205ENST00000426576 KRTAP5-7Q6L8G8 165 aa0.87□□□□□ -2.27
CCDC88A-205ENST00000426576 LCE3EQ5T5B0 92 aa0.87□□□□□ -2.27
CCDC88A-205ENST00000426576 KRTAP19-2Q3LHN2 52 aa0.86□□□□□ -2.27
CCDC88A-205ENST00000426576 LCE3CQ5T5A8 94 aa0.84□□□□□ -2.27
CCDC88A-205ENST00000426576 COX7CP15954 63 aa0.84□□□□□ -2.28
CCDC88A-205ENST00000426576 MT1MQ8N339 61 aa0.83□□□□□ -2.28
CCDC88A-205ENST00000426576 KRTAP20-2Q3LI61 65 aa0.81□□□□□ -2.28
CCDC88A-205ENST00000426576 MUC12Q9UKN1 5478 aa0.81□□□□□ -2.28
CCDC88A-205ENST00000426576 MUC5ACP98088 5654 aa0.81□□□□□ -2.28
CCDC88A-205ENST00000426576 LCE3DQ9BYE3 92 aa0.81□□□□□ -2.28
CCDC88A-205ENST00000426576 KRTAP4-3Q9BYR4 195 aa0.79□□□□□ -2.28
CCDC88A-205ENST00000426576 MT1EP04732 61 aa0.79□□□□□ -2.28
CCDC88A-205ENST00000426576 MT1XP80297 61 aa0.78□□□□□ -2.28
CCDC88A-205ENST00000426576 KRTAP5-10Q6L8G5 202 aa0.78□□□□□ -2.28
CCDC88A-205ENST00000426576 KRTAP6-2Q3LI66 62 aa0.77□□□□□ -2.29
CCDC88A-205ENST00000426576 INE1O15225 51 aa0.75□□□□□ -2.29
CCDC88A-205ENST00000426576 MT1AP04731 61 aa0.74□□□□□ -2.29
CCDC88A-205ENST00000426576 MT1LQ93083 61 aa0.74□□□□□ -2.29
CCDC88A-205ENST00000426576 KRTAP12-1P59990 96 aa0.72□□□□□ -2.29
CCDC88A-205ENST00000426576 KRTAP21-1Q3LI58 79 aa0.7□□□□□ -2.3
CCDC88A-205ENST00000426576 LINC01558Q9Y6Z2 57 aa0.69□□□□□ -2.3
CCDC88A-205ENST00000426576 KRTAP19-7Q3SYF9 63 aa0.67□□□□□ -2.3
CCDC88A-205ENST00000426576 KRTAP21-2Q3LI59 83 aa0.61□□□□□ -2.31
CCDC88A-205ENST00000426576 KRTAP6-1Q3LI64 71 aa0.61□□□□□ -2.31
CCDC88A-205ENST00000426576 MUC16Q8WXI7 14507 aa0.4□□□□□ -2.35
CCDC88A-205ENST00000426576 PRM1P04553 51 aa0.4□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 10.7 ms