RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 LCE1DQ5T752 114 aa6.64□□□□□ -1.35
CCDC28B-202ENST00000421922 KRTAP4-7Q9BYR0 210 aa6.61□□□□□ -1.35
CCDC28B-202ENST00000421922 KRTAP5-9P26371 169 aa6.58□□□□□ -1.36
CCDC28B-202ENST00000421922 KMT2DO14686 5537 aa6.53□□□□□ -1.36
CCDC28B-202ENST00000421922 KRTAP8-1Q8IUC2 63 aa6.53□□□□□ -1.36
CCDC28B-202ENST00000421922 MDN1Q9NU22 5596 aa6.52□□□□□ -1.37
CCDC28B-202ENST00000421922 KRTAP2-3P0C7H8 128 aa6.51□□□□□ -1.37
CCDC28B-202ENST00000421922 KRTAP2-4Q9BYR9 128 aa6.51□□□□□ -1.37
CCDC28B-202ENST00000421922 KRTAP4-9Q9BYQ8 210 aa6.45□□□□□ -1.38
CCDC28B-202ENST00000421922 LCE4AQ5TA78 99 aa6.44□□□□□ -1.38
CCDC28B-202ENST00000421922 KRTAP12-3P60328 96 aa6.41□□□□□ -1.38
CCDC28B-202ENST00000421922 KRTAP19-5Q3LI72 72 aa6.41□□□□□ -1.38
CCDC28B-202ENST00000421922 KRTAP4-2Q9BYR5 136 aa6.34□□□□□ -1.39
CCDC28B-202ENST00000421922 KRTAP19-7Q3SYF9 63 aa6.32□□□□□ -1.4
CCDC28B-202ENST00000421922 SPRR2FQ96RM1 72 aa6.32□□□□□ -1.4
CCDC28B-202ENST00000421922 SPRR2EP22531 72 aa6.27□□□□□ -1.41
CCDC28B-202ENST00000421922 SPRR2BP35325 72 aa6.27□□□□□ -1.41
CCDC28B-202ENST00000421922 SPRR2AP35326 72 aa6.27□□□□□ -1.41
CCDC28B-202ENST00000421922 KRTAP2-2Q9BYT5 123 aa6.27□□□□□ -1.41
CCDC28B-202ENST00000421922 KRTAP2-1Q9BYU5 128 aa6.27□□□□□ -1.41
CCDC28B-202ENST00000421922 MT1EP04732 61 aa6.25□□□□□ -1.41
CCDC28B-202ENST00000421922 KRTAP15-1Q3LI76 137 aa6.23□□□□□ -1.41
CCDC28B-202ENST00000421922 KRTAP4-11Q9BYQ6 195 aa6.23□□□□□ -1.41
CCDC28B-202ENST00000421922 LCE1AQ5T7P2 110 aa6.15□□□□□ -1.43
CCDC28B-202ENST00000421922 MT1LQ93083 61 aa6.1□□□□□ -1.43
CCDC28B-202ENST00000421922 LCE5AQ5TCM9 118 aa6.09□□□□□ -1.43
CCDC28B-202ENST00000421922 SPRR2DP22532 72 aa6.07□□□□□ -1.44
CCDC28B-202ENST00000421922 KRTAP19-3Q7Z4W3 81 aa6.07□□□□□ -1.44
CCDC28B-202ENST00000421922 MT1GP13640 62 aa6□□□□□ -1.45
CCDC28B-202ENST00000421922 GPR98Q8WXG9 6306 aa5.96□□□□□ -1.46
CCDC28B-202ENST00000421922 LCE3CQ5T5A8 94 aa5.95□□□□□ -1.46
CCDC28B-202ENST00000421922 MT1MQ8N339 61 aa5.91□□□□□ -1.46
CCDC28B-202ENST00000421922 KRTAP4-3Q9BYR4 195 aa5.74□□□□□ -1.49
CCDC28B-202ENST00000421922 SPRR5A0A1B0GTR4 108 aa5.73□□□□□ -1.49
CCDC28B-202ENST00000421922 DSTQ03001 7570 aaKnown RBP5.69□□□□□ -1.5
CCDC28B-202ENST00000421922 KRTAP5-3Q6L8H2 238 aa5.66□□□□□ -1.5
CCDC28B-202ENST00000421922 LUZP6Q538Z0 58 aa5.63□□□□□ -1.51
CCDC28B-202ENST00000421922 A0A0A0MQY5 61 aa5.56□□□□□ -1.52
CCDC28B-202ENST00000421922 KRTAP9-6A8MVA2 160 aa5.53□□□□□ -1.52
CCDC28B-202ENST00000421922 KRTAP5-10Q6L8G5 202 aa5.4□□□□□ -1.54
CCDC28B-202ENST00000421922 HMCN1Q96RW7 5635 aa5.4□□□□□ -1.55
CCDC28B-202ENST00000421922 AHNAK2Q8IVF2 5795 aa5.38□□□□□ -1.55
CCDC28B-202ENST00000421922 MT4P47944 62 aa5.37□□□□□ -1.55
CCDC28B-202ENST00000421922 KRTAP5-5Q701N2 237 aaPredicted RBP5.29□□□□□ -1.56
CCDC28B-202ENST00000421922 NDUFAF8A1L188 74 aa5.28□□□□□ -1.56
CCDC28B-202ENST00000421922 KRTAP5-7Q6L8G8 165 aa5.25□□□□□ -1.57
CCDC28B-202ENST00000421922 MT1AP04731 61 aa5.22□□□□□ -1.57
CCDC28B-202ENST00000421922 KRTAP5-4Q6L8H1 288 aa5.16□□□□□ -1.58
CCDC28B-202ENST00000421922 KRTAP6-1Q3LI64 71 aa5.13□□□□□ -1.59
CCDC28B-202ENST00000421922 KRTAP12-4P60329 112 aa5.07□□□□□ -1.6
CCDC28B-202ENST00000421922 SYNE1Q8NF91 8797 aaKnown RBP4.95□□□□□ -1.62
CCDC28B-202ENST00000421922 KRTAP20-2Q3LI61 65 aa4.9□□□□□ -1.62
CCDC28B-202ENST00000421922 KRTAP6-2Q3LI66 62 aa4.77□□□□□ -1.65
CCDC28B-202ENST00000421922 MT3P25713 68 aa4.75□□□□□ -1.65
CCDC28B-202ENST00000421922 KRTAP5-2Q701N4 177 aa4.63□□□□□ -1.67
CCDC28B-202ENST00000421922 AHNAKQ09666 5890 aaKnown RBP4.53□□□□□ -1.68
CCDC28B-202ENST00000421922 MUC5ACP98088 5654 aa4.52□□□□□ -1.69
CCDC28B-202ENST00000421922 MUC5BQ9HC84 5762 aaPredicted RBP4.49□□□□□ -1.69
CCDC28B-202ENST00000421922 KRTAP5-8O75690 187 aa4.49□□□□□ -1.69
CCDC28B-202ENST00000421922 LCE3DQ9BYE3 92 aa4.46□□□□□ -1.69
CCDC28B-202ENST00000421922 INE1O15225 51 aa4.38□□□□□ -1.71
CCDC28B-202ENST00000421922 LCE3EQ5T5B0 92 aa4.33□□□□□ -1.72
CCDC28B-202ENST00000421922 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.24□□□□□ -1.73
CCDC28B-202ENST00000421922 KRTAP5-11Q6L8G4 156 aa4.21□□□□□ -1.73
CCDC28B-202ENST00000421922 OBSCNQ5VST9 7968 aa4.2□□□□□ -1.74
CCDC28B-202ENST00000421922 LCE1EQ5T753 118 aa4.13□□□□□ -1.75
CCDC28B-202ENST00000421922 KRTAP5-1Q6L8H4 278 aa4.08□□□□□ -1.76
CCDC28B-202ENST00000421922 LCE1BQ5T7P3 118 aa3.93□□□□□ -1.78
CCDC28B-202ENST00000421922 LCE1FQ5T754 118 aa3.9□□□□□ -1.78
CCDC28B-202ENST00000421922 LCE1CQ5T751 118 aa3.84□□□□□ -1.79
CCDC28B-202ENST00000421922 PRM1P04553 51 aa3.69□□□□□ -1.82
CCDC28B-202ENST00000421922 KRTAP4-4Q9BYR3 166 aa3.55□□□□□ -1.84
CCDC28B-202ENST00000421922 KRTAP21-2Q3LI59 83 aa3.33□□□□□ -1.88
CCDC28B-202ENST00000421922 PHGR1C9JFL3 82 aa3.15□□□□□ -1.91
CCDC28B-202ENST00000421922 MUC19Q7Z5P9 8384 aa2.64□□□□□ -1.99
CCDC28B-202ENST00000421922 KRTAP21-1Q3LI58 79 aa2.38□□□□□ -2.03
CCDC28B-202ENST00000421922 MUC16Q8WXI7 14507 aa1.87□□□□□ -2.11
Retrieved 77 of 20,778 RNA–protein pairs in 97.2 ms