RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 LCE5AQ5TCM9 118 aa6.82□□□□□ -1.32
PTCD3-204ENST00000418628 K7ERS5 55 aa6.81□□□□□ -1.32
PTCD3-204ENST00000418628 KRTAP19-3Q7Z4W3 81 aa6.81□□□□□ -1.32
PTCD3-204ENST00000418628 KRTAP9-9Q9BYP9 154 aa6.8□□□□□ -1.32
PTCD3-204ENST00000418628 KRTAP9-4Q9BYQ2 154 aa6.8□□□□□ -1.32
PTCD3-204ENST00000418628 KRTAP25-1Q3LHN0 102 aa6.73□□□□□ -1.33
PTCD3-204ENST00000418628 KRTAP2-2Q9BYT5 123 aa6.7□□□□□ -1.34
PTCD3-204ENST00000418628 KRTAP2-1Q9BYU5 128 aa6.7□□□□□ -1.34
PTCD3-204ENST00000418628 MT1LQ93083 61 aa6.68□□□□□ -1.34
PTCD3-204ENST00000418628 MT1GP13640 62 aa6.67□□□□□ -1.34
PTCD3-204ENST00000418628 CDC42SE1Q9NRR8 79 aa6.65□□□□□ -1.34
PTCD3-204ENST00000418628 KRTAP12-3P60328 96 aa6.59□□□□□ -1.35
PTCD3-204ENST00000418628 MT1MQ8N339 61 aa6.59□□□□□ -1.35
PTCD3-204ENST00000418628 PP632Q6XCG6 107 aa6.57□□□□□ -1.36
PTCD3-204ENST00000418628 DSTQ03001 7570 aaKnown RBP6.54□□□□□ -1.36
PTCD3-204ENST00000418628 KRTAP23-1A1A580 65 aa6.54□□□□□ -1.36
PTCD3-204ENST00000418628 ROMO1P60602 79 aa6.46□□□□□ -1.38
PTCD3-204ENST00000418628 LCE1DQ5T752 114 aa6.46□□□□□ -1.38
PTCD3-204ENST00000418628 KRTAP4-7Q9BYR0 210 aa6.44□□□□□ -1.38
PTCD3-204ENST00000418628 KRTAP4-3Q9BYR4 195 aa6.39□□□□□ -1.39
PTCD3-204ENST00000418628 KRTAP4-9Q9BYQ8 210 aa6.3□□□□□ -1.4
PTCD3-204ENST00000418628 KRTAP19-4Q3LI73 84 aa6.28□□□□□ -1.4
PTCD3-204ENST00000418628 LCE4AQ5TA78 99 aa6.27□□□□□ -1.41
PTCD3-204ENST00000418628 KRTAP15-1Q3LI76 137 aa6.26□□□□□ -1.41
PTCD3-204ENST00000418628 KRTAP4-2Q9BYR5 136 aa6.18□□□□□ -1.42
PTCD3-204ENST00000418628 KRTAP5-4Q6L8H1 288 aa6.16□□□□□ -1.42
PTCD3-204ENST00000418628 BRK1Q8WUW1 75 aa6.16□□□□□ -1.42
PTCD3-204ENST00000418628 LCE3CQ5T5A8 94 aa6.11□□□□□ -1.43
PTCD3-204ENST00000418628 KRTAP4-11Q9BYQ6 195 aa6.08□□□□□ -1.44
PTCD3-204ENST00000418628 KRTAP5-5Q701N2 237 aaPredicted RBP6.07□□□□□ -1.44
PTCD3-204ENST00000418628 MT4P47944 62 aa5.98□□□□□ -1.45
PTCD3-204ENST00000418628 HMCN1Q96RW7 5635 aa5.96□□□□□ -1.45
PTCD3-204ENST00000418628 H3BS24 57 aa5.87□□□□□ -1.47
PTCD3-204ENST00000418628 KRTAP9-6A8MVA2 160 aa5.82□□□□□ -1.48
PTCD3-204ENST00000418628 PMAIP1Q13794 54 aa5.79□□□□□ -1.48
PTCD3-204ENST00000418628 SPRR5A0A1B0GTR4 108 aa5.77□□□□□ -1.49
PTCD3-204ENST00000418628 SYNE1Q8NF91 8797 aaKnown RBP5.76□□□□□ -1.49
PTCD3-204ENST00000418628 KRTAP20-2Q3LI61 65 aa5.75□□□□□ -1.49
PTCD3-204ENST00000418628 KRTAP12-4P60329 112 aa5.71□□□□□ -1.5
PTCD3-204ENST00000418628 SVIPQ8NHG7 77 aa5.7□□□□□ -1.5
PTCD3-204ENST00000418628 MT1AP04731 61 aa5.69□□□□□ -1.5
PTCD3-204ENST00000418628 GPR98Q8WXG9 6306 aa5.67□□□□□ -1.5
PTCD3-204ENST00000418628 AHNAK2Q8IVF2 5795 aa5.66□□□□□ -1.5
PTCD3-204ENST00000418628 PRO0628Q9UI54 55 aa5.64□□□□□ -1.51
PTCD3-204ENST00000418628 KRTAP6-1Q3LI64 71 aa5.63□□□□□ -1.51
PTCD3-204ENST00000418628 KRTAP5-3Q6L8H2 238 aa5.61□□□□□ -1.51
PTCD3-204ENST00000418628 PRAC1Q96KF2 57 aa5.56□□□□□ -1.52
PTCD3-204ENST00000418628 KRTAP5-10Q6L8G5 202 aa5.54□□□□□ -1.52
PTCD3-204ENST00000418628 KRTAP5-2Q701N4 177 aa5.47□□□□□ -1.53
PTCD3-204ENST00000418628 KTN1-AS1Q86SY8 53 aa5.34□□□□□ -1.55
PTCD3-204ENST00000418628 KRTAP6-2Q3LI66 62 aa5.3□□□□□ -1.56
PTCD3-204ENST00000418628 KRTAP5-7Q6L8G8 165 aa5.28□□□□□ -1.56
PTCD3-204ENST00000418628 MT3P25713 68 aa5.15□□□□□ -1.59
PTCD3-204ENST00000418628 KRTAP5-8O75690 187 aa5.02□□□□□ -1.61
PTCD3-204ENST00000418628 OBSCNQ5VST9 7968 aa4.94□□□□□ -1.62
PTCD3-204ENST00000418628 KRTAP5-1Q6L8H4 278 aa4.83□□□□□ -1.64
PTCD3-204ENST00000418628 LCE1EQ5T753 118 aa4.71□□□□□ -1.66
PTCD3-204ENST00000418628 MUC5ACP98088 5654 aa4.69□□□□□ -1.66
PTCD3-204ENST00000418628 MUC5BQ9HC84 5762 aaPredicted RBP4.6□□□□□ -1.67
PTCD3-204ENST00000418628 LUZP6Q538Z0 58 aa4.56□□□□□ -1.68
PTCD3-204ENST00000418628 AHNAKQ09666 5890 aaKnown RBP4.51□□□□□ -1.69
PTCD3-204ENST00000418628 LCE3DQ9BYE3 92 aa4.43□□□□□ -1.7
PTCD3-204ENST00000418628 LCE1CQ5T751 118 aa4.37□□□□□ -1.71
PTCD3-204ENST00000418628 LCE1BQ5T7P3 118 aa4.37□□□□□ -1.71
PTCD3-204ENST00000418628 A0A0A0MQY5 61 aa4.36□□□□□ -1.71
PTCD3-204ENST00000418628 LCE3EQ5T5B0 92 aa4.22□□□□□ -1.73
PTCD3-204ENST00000418628 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.19□□□□□ -1.74
PTCD3-204ENST00000418628 KRTAP5-11Q6L8G4 156 aa4.12□□□□□ -1.75
PTCD3-204ENST00000418628 NDUFAF8A1L188 74 aa3.93□□□□□ -1.78
PTCD3-204ENST00000418628 LCE1FQ5T754 118 aa3.76□□□□□ -1.81
PTCD3-204ENST00000418628 KRTAP21-2Q3LI59 83 aa3.74□□□□□ -1.81
PTCD3-204ENST00000418628 KRTAP4-4Q9BYR3 166 aa3.44□□□□□ -1.86
PTCD3-204ENST00000418628 PHGR1C9JFL3 82 aa3.39□□□□□ -1.87
PTCD3-204ENST00000418628 PRM1P04553 51 aa3.32□□□□□ -1.88
PTCD3-204ENST00000418628 INE1O15225 51 aa3.22□□□□□ -1.89
PTCD3-204ENST00000418628 MUC19Q7Z5P9 8384 aa3.05□□□□□ -1.92
PTCD3-204ENST00000418628 KRTAP21-1Q3LI58 79 aa2.39□□□□□ -2.03
PTCD3-204ENST00000418628 MUC16Q8WXI7 14507 aa2.24□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 175.5 ms