RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 KRTAP8-1Q8IUC2 63 aa5.37□□□□□ -1.55
GPNMB-203ENST00000409458 CRCT1Q9UGL9 99 aa5.37□□□□□ -1.55
GPNMB-203ENST00000409458 H3BS24 57 aa5.34□□□□□ -1.55
GPNMB-203ENST00000409458 KRTAP19-4Q3LI73 84 aa5.29□□□□□ -1.56
GPNMB-203ENST00000409458 KRTAP19-5Q3LI72 72 aa5.28□□□□□ -1.56
GPNMB-203ENST00000409458 KRTAP12-3P60328 96 aa5.28□□□□□ -1.56
GPNMB-203ENST00000409458 KRTAP19-7Q3SYF9 63 aa5.21□□□□□ -1.57
GPNMB-203ENST00000409458 MACF1Q9UPN3 7388 aaKnown RBP5.19□□□□□ -1.58
GPNMB-203ENST00000409458 KRTAP15-1Q3LI76 137 aa5.16□□□□□ -1.58
GPNMB-203ENST00000409458 MT1EP04732 61 aa5.12□□□□□ -1.59
GPNMB-203ENST00000409458 SYNE2Q8WXH0 6885 aaKnown RBP5.09□□□□□ -1.59
GPNMB-203ENST00000409458 MUC12Q9UKN1 5478 aa5.03□□□□□ -1.6
GPNMB-203ENST00000409458 SPRR2FQ96RM1 72 aa5.02□□□□□ -1.61
GPNMB-203ENST00000409458 MT1LQ93083 61 aa5.01□□□□□ -1.61
GPNMB-203ENST00000409458 KRTAP5-9P26371 169 aa4.95□□□□□ -1.62
GPNMB-203ENST00000409458 SPRR5A0A1B0GTR4 108 aa4.93□□□□□ -1.62
GPNMB-203ENST00000409458 LCE3CQ5T5A8 94 aa4.92□□□□□ -1.62
GPNMB-203ENST00000409458 KRTAP19-3Q7Z4W3 81 aa4.91□□□□□ -1.62
GPNMB-203ENST00000409458 MDN1Q9NU22 5596 aa4.86□□□□□ -1.63
GPNMB-203ENST00000409458 KRTAP6-3Q3LI67 103 aa4.85□□□□□ -1.63
GPNMB-203ENST00000409458 MT1GP13640 62 aa4.83□□□□□ -1.64
GPNMB-203ENST00000409458 MT1MQ8N339 61 aa4.82□□□□□ -1.64
GPNMB-203ENST00000409458 LCE1AQ5T7P2 110 aa4.79□□□□□ -1.64
GPNMB-203ENST00000409458 SPRR2EP22531 72 aa4.77□□□□□ -1.65
GPNMB-203ENST00000409458 SPRR2BP35325 72 aa4.77□□□□□ -1.65
GPNMB-203ENST00000409458 SPRR2AP35326 72 aa4.77□□□□□ -1.65
GPNMB-203ENST00000409458 KRTAP4-3Q9BYR4 195 aa4.75□□□□□ -1.65
GPNMB-203ENST00000409458 LUZP6Q538Z0 58 aa4.72□□□□□ -1.65
GPNMB-203ENST00000409458 KRTAP9-6A8MVA2 160 aa4.7□□□□□ -1.66
GPNMB-203ENST00000409458 NDUFAF8A1L188 74 aa4.65□□□□□ -1.66
GPNMB-203ENST00000409458 NEBP20929 6669 aa4.62□□□□□ -1.67
GPNMB-203ENST00000409458 SPRR2DP22532 72 aa4.58□□□□□ -1.68
GPNMB-203ENST00000409458 DSTQ03001 7570 aaKnown RBP4.54□□□□□ -1.68
GPNMB-203ENST00000409458 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.49□□□□□ -1.69
GPNMB-203ENST00000409458 KRTAP5-5Q701N2 237 aaPredicted RBP4.35□□□□□ -1.71
GPNMB-203ENST00000409458 KRTAP2-3P0C7H8 128 aa4.3□□□□□ -1.72
GPNMB-203ENST00000409458 KRTAP2-4Q9BYR9 128 aa4.3□□□□□ -1.72
GPNMB-203ENST00000409458 KRTAP2-1Q9BYU5 128 aa4.3□□□□□ -1.72
GPNMB-203ENST00000409458 MT1AP04731 61 aa4.25□□□□□ -1.73
GPNMB-203ENST00000409458 KRTAP6-1Q3LI64 71 aa4.23□□□□□ -1.73
GPNMB-203ENST00000409458 KRTAP20-1Q3LI63 56 aa4.17□□□□□ -1.74
GPNMB-203ENST00000409458 KRTAP5-4Q6L8H1 288 aa4.14□□□□□ -1.75
GPNMB-203ENST00000409458 KRTAP2-2Q9BYT5 123 aa4.14□□□□□ -1.75
GPNMB-203ENST00000409458 SYNE1Q8NF91 8797 aaKnown RBP4.11□□□□□ -1.75
GPNMB-203ENST00000409458 KRTAP5-11Q6L8G4 156 aa4.03□□□□□ -1.76
GPNMB-203ENST00000409458 A0A0A0MQY5 61 aa4.03□□□□□ -1.76
GPNMB-203ENST00000409458 KRTAP12-4P60329 112 aa4□□□□□ -1.77
GPNMB-203ENST00000409458 MT4P47944 62 aa3.99□□□□□ -1.77
GPNMB-203ENST00000409458 HMCN1Q96RW7 5635 aa3.91□□□□□ -1.78
GPNMB-203ENST00000409458 KRTAP6-2Q3LI66 62 aa3.89□□□□□ -1.79
GPNMB-203ENST00000409458 KRTAP20-2Q3LI61 65 aa3.88□□□□□ -1.79
GPNMB-203ENST00000409458 MT3P25713 68 aa3.83□□□□□ -1.8
GPNMB-203ENST00000409458 INE1O15225 51 aa3.78□□□□□ -1.8
GPNMB-203ENST00000409458 KRTAP5-1Q6L8H4 278 aa3.76□□□□□ -1.81
GPNMB-203ENST00000409458 KRTAP5-2Q701N4 177 aa3.76□□□□□ -1.81
GPNMB-203ENST00000409458 GPR98Q8WXG9 6306 aa3.72□□□□□ -1.81
GPNMB-203ENST00000409458 LCE3DQ9BYE3 92 aa3.69□□□□□ -1.82
GPNMB-203ENST00000409458 KRTAP4-4Q9BYR3 166 aa3.69□□□□□ -1.82
GPNMB-203ENST00000409458 LCE3EQ5T5B0 92 aa3.59□□□□□ -1.84
GPNMB-203ENST00000409458 OBSCNQ5VST9 7968 aa3.53□□□□□ -1.85
GPNMB-203ENST00000409458 LCE1EQ5T753 118 aa3.49□□□□□ -1.85
GPNMB-203ENST00000409458 AHNAK2Q8IVF2 5795 aa3.49□□□□□ -1.85
GPNMB-203ENST00000409458 KRTAP5-10Q6L8G5 202 aa3.25□□□□□ -1.89
GPNMB-203ENST00000409458 KRTAP5-8O75690 187 aa3.24□□□□□ -1.89
GPNMB-203ENST00000409458 MUC5ACP98088 5654 aa3.16□□□□□ -1.9
GPNMB-203ENST00000409458 PRM1P04553 51 aa3.15□□□□□ -1.9
GPNMB-203ENST00000409458 LCE1BQ5T7P3 118 aa3.15□□□□□ -1.9
GPNMB-203ENST00000409458 KRTAP5-7Q6L8G8 165 aa3.12□□□□□ -1.91
GPNMB-203ENST00000409458 LCE1CQ5T751 118 aa3.1□□□□□ -1.91
GPNMB-203ENST00000409458 AHNAKQ09666 5890 aaKnown RBP2.88□□□□□ -1.95
GPNMB-203ENST00000409458 LCE1FQ5T754 118 aa2.86□□□□□ -1.95
GPNMB-203ENST00000409458 MUC5BQ9HC84 5762 aaPredicted RBP2.82□□□□□ -1.96
GPNMB-203ENST00000409458 KRTAP21-2Q3LI59 83 aa2.76□□□□□ -1.97
GPNMB-203ENST00000409458 PHGR1C9JFL3 82 aa2.36□□□□□ -2.03
GPNMB-203ENST00000409458 MUC19Q7Z5P9 8384 aa2.07□□□□□ -2.08
GPNMB-203ENST00000409458 KRTAP21-1Q3LI58 79 aa1.91□□□□□ -2.1
GPNMB-203ENST00000409458 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 47.3 ms