RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 KRTAP15-1Q3LI76 137 aa5.46□□□□□ -1.54
LIMS1-204ENST00000409441 KRTAP10-7P60409 375 aaPredicted RBP5.33□□□□□ -1.56
LIMS1-204ENST00000409441 MACF1Q9UPN3 7388 aaKnown RBP5.32□□□□□ -1.56
LIMS1-204ENST00000409441 KRTAP10-12P60413 245 aa5.29□□□□□ -1.56
LIMS1-204ENST00000409441 LCE3AQ5TA76 89 aa5.25□□□□□ -1.57
LIMS1-204ENST00000409441 SYNE2Q8WXH0 6885 aaKnown RBP5.24□□□□□ -1.57
LIMS1-204ENST00000409441 KRTAP8-1Q8IUC2 63 aa5.19□□□□□ -1.58
LIMS1-204ENST00000409441 KRTAP6-3Q3LI67 103 aa5.19□□□□□ -1.58
LIMS1-204ENST00000409441 KMT2DO14686 5537 aa5.19□□□□□ -1.58
LIMS1-204ENST00000409441 NDUFAF8A1L188 74 aa5.15□□□□□ -1.58
LIMS1-204ENST00000409441 SPRR5A0A1B0GTR4 108 aa5.1□□□□□ -1.59
LIMS1-204ENST00000409441 KRTAP5-9P26371 169 aa5.1□□□□□ -1.59
LIMS1-204ENST00000409441 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.08□□□□□ -1.6
LIMS1-204ENST00000409441 LUZP6Q538Z0 58 aa5.08□□□□□ -1.6
LIMS1-204ENST00000409441 SPRR2FQ96RM1 72 aa5.06□□□□□ -1.6
LIMS1-204ENST00000409441 KRTAP12-3P60328 96 aa5.05□□□□□ -1.6
LIMS1-204ENST00000409441 KRTAP19-7Q3SYF9 63 aa4.97□□□□□ -1.61
LIMS1-204ENST00000409441 KRTAP19-5Q3LI72 72 aa4.96□□□□□ -1.62
LIMS1-204ENST00000409441 MUC12Q9UKN1 5478 aa4.93□□□□□ -1.62
LIMS1-204ENST00000409441 MT1EP04732 61 aa4.9□□□□□ -1.62
LIMS1-204ENST00000409441 SPRR2EP22531 72 aa4.89□□□□□ -1.63
LIMS1-204ENST00000409441 SPRR2BP35325 72 aa4.89□□□□□ -1.63
LIMS1-204ENST00000409441 SPRR2AP35326 72 aa4.89□□□□□ -1.63
LIMS1-204ENST00000409441 LCE1AQ5T7P2 110 aa4.89□□□□□ -1.63
LIMS1-204ENST00000409441 MDN1Q9NU22 5596 aa4.87□□□□□ -1.63
LIMS1-204ENST00000409441 KRTAP5-11Q6L8G4 156 aa4.86□□□□□ -1.63
LIMS1-204ENST00000409441 NEBP20929 6669 aa4.84□□□□□ -1.63
LIMS1-204ENST00000409441 KRTAP19-3Q7Z4W3 81 aa4.79□□□□□ -1.64
LIMS1-204ENST00000409441 MT1LQ93083 61 aa4.75□□□□□ -1.65
LIMS1-204ENST00000409441 LCE3CQ5T5A8 94 aa4.74□□□□□ -1.65
LIMS1-204ENST00000409441 MT1GP13640 62 aa4.72□□□□□ -1.65
LIMS1-204ENST00000409441 SPRR2DP22532 72 aa4.72□□□□□ -1.65
LIMS1-204ENST00000409441 MT1MQ8N339 61 aa4.64□□□□□ -1.67
LIMS1-204ENST00000409441 KRTAP2-3P0C7H8 128 aa4.62□□□□□ -1.67
LIMS1-204ENST00000409441 KRTAP20-1Q3LI63 56 aa4.62□□□□□ -1.67
LIMS1-204ENST00000409441 KRTAP2-4Q9BYR9 128 aa4.62□□□□□ -1.67
LIMS1-204ENST00000409441 LCE1EQ5T753 118 aa4.55□□□□□ -1.68
LIMS1-204ENST00000409441 KRTAP4-3Q9BYR4 195 aa4.54□□□□□ -1.68
LIMS1-204ENST00000409441 KRTAP2-2Q9BYT5 123 aa4.5□□□□□ -1.69
LIMS1-204ENST00000409441 KRTAP2-1Q9BYU5 128 aa4.5□□□□□ -1.69
LIMS1-204ENST00000409441 KRTAP9-6A8MVA2 160 aa4.47□□□□□ -1.69
LIMS1-204ENST00000409441 DSTQ03001 7570 aaKnown RBP4.47□□□□□ -1.69
LIMS1-204ENST00000409441 KRTAP5-1Q6L8H4 278 aa4.35□□□□□ -1.71
LIMS1-204ENST00000409441 INE1O15225 51 aa4.31□□□□□ -1.72
LIMS1-204ENST00000409441 KRTAP5-4Q6L8H1 288 aa4.27□□□□□ -1.73
LIMS1-204ENST00000409441 KRTAP5-5Q701N2 237 aaPredicted RBP4.21□□□□□ -1.73
LIMS1-204ENST00000409441 KRTAP4-4Q9BYR3 166 aa4.21□□□□□ -1.74
LIMS1-204ENST00000409441 MT4P47944 62 aa4.11□□□□□ -1.75
LIMS1-204ENST00000409441 MT1AP04731 61 aa4.04□□□□□ -1.76
LIMS1-204ENST00000409441 KRTAP12-4P60329 112 aa4.03□□□□□ -1.77
LIMS1-204ENST00000409441 KRTAP6-1Q3LI64 71 aa4.01□□□□□ -1.77
LIMS1-204ENST00000409441 HMCN1Q96RW7 5635 aa3.97□□□□□ -1.77
LIMS1-204ENST00000409441 SYNE1Q8NF91 8797 aaKnown RBP3.96□□□□□ -1.78
LIMS1-204ENST00000409441 MT3P25713 68 aa3.93□□□□□ -1.78
LIMS1-204ENST00000409441 KRTAP20-2Q3LI61 65 aa3.93□□□□□ -1.78
LIMS1-204ENST00000409441 KRTAP6-2Q3LI66 62 aa3.76□□□□□ -1.81
LIMS1-204ENST00000409441 KRTAP5-2Q701N4 177 aa3.73□□□□□ -1.81
LIMS1-204ENST00000409441 OBSCNQ5VST9 7968 aa3.7□□□□□ -1.82
LIMS1-204ENST00000409441 AHNAK2Q8IVF2 5795 aa3.64□□□□□ -1.83
LIMS1-204ENST00000409441 LCE3DQ9BYE3 92 aa3.61□□□□□ -1.83
LIMS1-204ENST00000409441 KRTAP5-10Q6L8G5 202 aa3.59□□□□□ -1.83
LIMS1-204ENST00000409441 GPR98Q8WXG9 6306 aa3.58□□□□□ -1.84
LIMS1-204ENST00000409441 LCE3EQ5T5B0 92 aa3.55□□□□□ -1.84
LIMS1-204ENST00000409441 LCE1FQ5T754 118 aa3.41□□□□□ -1.86
LIMS1-204ENST00000409441 KRTAP5-7Q6L8G8 165 aa3.39□□□□□ -1.87
LIMS1-204ENST00000409441 KRTAP5-8O75690 187 aa3.37□□□□□ -1.87
LIMS1-204ENST00000409441 PRM1P04553 51 aa3.22□□□□□ -1.89
LIMS1-204ENST00000409441 MUC5ACP98088 5654 aa3.13□□□□□ -1.91
LIMS1-204ENST00000409441 LCE1BQ5T7P3 118 aa3.09□□□□□ -1.91
LIMS1-204ENST00000409441 LCE1CQ5T751 118 aa3.06□□□□□ -1.92
LIMS1-204ENST00000409441 MUC5BQ9HC84 5762 aaPredicted RBP2.95□□□□□ -1.94
LIMS1-204ENST00000409441 AHNAKQ09666 5890 aaKnown RBP2.87□□□□□ -1.95
LIMS1-204ENST00000409441 KRTAP21-2Q3LI59 83 aa2.64□□□□□ -1.99
LIMS1-204ENST00000409441 MUC19Q7Z5P9 8384 aa2.43□□□□□ -2.02
LIMS1-204ENST00000409441 PHGR1C9JFL3 82 aa2.35□□□□□ -2.03
LIMS1-204ENST00000409441 KRTAP21-1Q3LI58 79 aa2.04□□□□□ -2.08
LIMS1-204ENST00000409441 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 116.5 ms