RNA–Protein interactions for RNA: ENST00000405271.5

EPCAM-202, Transcript of epithelial cell adhesion molecule, humanhuman

TSL 5 BASIC

Gene EPCAM, Length 1,530 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPCAM-202ENST00000405271 KRTAP19-5Q3LI72 72 aa8.18□□□□□ -1.1
EPCAM-202ENST00000405271 KRTAP19-7Q3SYF9 63 aa8.18□□□□□ -1.1
EPCAM-202ENST00000405271 PRAC1Q96KF2 57 aa8.15□□□□□ -1.1
EPCAM-202ENST00000405271 KRTAP2-3P0C7H8 128 aa8.13□□□□□ -1.11
EPCAM-202ENST00000405271 KRTAP2-4Q9BYR9 128 aa8.13□□□□□ -1.11
EPCAM-202ENST00000405271 KRTAP12-3P60328 96 aa8.11□□□□□ -1.11
EPCAM-202ENST00000405271 MT1EP04732 61 aa8.07□□□□□ -1.12
EPCAM-202ENST00000405271 SPRR2DP22532 72 aa7.99□□□□□ -1.13
EPCAM-202ENST00000405271 KRTAP2-2Q9BYT5 123 aa7.88□□□□□ -1.15
EPCAM-202ENST00000405271 KRTAP2-1Q9BYU5 128 aa7.88□□□□□ -1.15
EPCAM-202ENST00000405271 KRTAP15-1Q3LI76 137 aa7.86□□□□□ -1.15
EPCAM-202ENST00000405271 KRTAP19-3Q7Z4W3 81 aa7.84□□□□□ -1.15
EPCAM-202ENST00000405271 MT1LQ93083 61 aa7.84□□□□□ -1.15
EPCAM-202ENST00000405271 LCE3BQ5TA77 95 aa7.78□□□□□ -1.16
EPCAM-202ENST00000405271 MT1GP13640 62 aa7.74□□□□□ -1.17
EPCAM-202ENST00000405271 KRTAP19-4Q3LI73 84 aa7.73□□□□□ -1.17
EPCAM-202ENST00000405271 LCE5AQ5TCM9 118 aa7.73□□□□□ -1.17
EPCAM-202ENST00000405271 MT1MQ8N339 61 aa7.62□□□□□ -1.19
EPCAM-202ENST00000405271 DSTQ03001 7570 aaKnown RBP7.62□□□□□ -1.19
EPCAM-202ENST00000405271 LCE3CQ5T5A8 94 aa7.55□□□□□ -1.2
EPCAM-202ENST00000405271 KRTAP4-7Q9BYR0 210 aa7.47□□□□□ -1.21
EPCAM-202ENST00000405271 KRTAP4-3Q9BYR4 195 aa7.38□□□□□ -1.23
EPCAM-202ENST00000405271 KRTAP4-9Q9BYQ8 210 aa7.23□□□□□ -1.25
EPCAM-202ENST00000405271 SPRR5A0A1B0GTR4 108 aa7.2□□□□□ -1.26
EPCAM-202ENST00000405271 KRTAP9-6A8MVA2 160 aa7.07□□□□□ -1.28
EPCAM-202ENST00000405271 LCE1DQ5T752 114 aa7.06□□□□□ -1.28
EPCAM-202ENST00000405271 LCE4AQ5TA78 99 aa7.06□□□□□ -1.28
EPCAM-202ENST00000405271 LOC100996750A0A140TA64 210 aa7.05□□□□□ -1.28
EPCAM-202ENST00000405271 KRTAP4-6Q9BYQ5 205 aa7.05□□□□□ -1.28
EPCAM-202ENST00000405271 MT4P47944 62 aa7□□□□□ -1.29
EPCAM-202ENST00000405271 KRTAP5-4Q6L8H1 288 aa6.99□□□□□ -1.29
EPCAM-202ENST00000405271 HMCN1Q96RW7 5635 aa6.98□□□□□ -1.29
EPCAM-202ENST00000405271 GPR98Q8WXG9 6306 aa6.93□□□□□ -1.3
EPCAM-202ENST00000405271 KRTAP5-5Q701N2 237 aaPredicted RBP6.92□□□□□ -1.3
EPCAM-202ENST00000405271 LUZP6Q538Z0 58 aa6.78□□□□□ -1.32
EPCAM-202ENST00000405271 MT1AP04731 61 aa6.71□□□□□ -1.34
EPCAM-202ENST00000405271 AHNAK2Q8IVF2 5795 aa6.64□□□□□ -1.35
EPCAM-202ENST00000405271 KRTAP6-1Q3LI64 71 aa6.6□□□□□ -1.35
EPCAM-202ENST00000405271 KRTAP20-2Q3LI61 65 aa6.58□□□□□ -1.36
EPCAM-202ENST00000405271 KRTAP12-4P60329 112 aa6.56□□□□□ -1.36
EPCAM-202ENST00000405271 SYNE1Q8NF91 8797 aaKnown RBP6.53□□□□□ -1.36
EPCAM-202ENST00000405271 KRTAP5-10Q6L8G5 202 aa6.51□□□□□ -1.37
EPCAM-202ENST00000405271 KRTAP5-3Q6L8H2 238 aa6.4□□□□□ -1.39
EPCAM-202ENST00000405271 KRTAP9-4Q9BYQ2 154 aa6.38□□□□□ -1.39
EPCAM-202ENST00000405271 H3BS24 57 aa6.31□□□□□ -1.4
EPCAM-202ENST00000405271 NDUFAF8A1L188 74 aa6.29□□□□□ -1.4
EPCAM-202ENST00000405271 KRTAP4-12Q9BQ66 201 aa6.28□□□□□ -1.4
EPCAM-202ENST00000405271 KRTAP5-7Q6L8G8 165 aa6.24□□□□□ -1.41
EPCAM-202ENST00000405271 KRTAP5-2Q701N4 177 aa6.14□□□□□ -1.43
EPCAM-202ENST00000405271 KRTAP6-2Q3LI66 62 aa6.13□□□□□ -1.43
EPCAM-202ENST00000405271 MT3P25713 68 aa6.09□□□□□ -1.44
EPCAM-202ENST00000405271 KRTAP9-9Q9BYP9 154 aa6.09□□□□□ -1.44
EPCAM-202ENST00000405271 KRTAP4-11Q9BYQ6 195 aa6□□□□□ -1.45
EPCAM-202ENST00000405271 OBSCNQ5VST9 7968 aa5.88□□□□□ -1.47
EPCAM-202ENST00000405271 KRTAP5-8O75690 187 aa5.79□□□□□ -1.48
EPCAM-202ENST00000405271 LCE3DQ9BYE3 92 aa5.61□□□□□ -1.51
EPCAM-202ENST00000405271 KRTAP4-2Q9BYR5 136 aa5.5□□□□□ -1.53
EPCAM-202ENST00000405271 KRTAP5-1Q6L8H4 278 aa5.49□□□□□ -1.53
EPCAM-202ENST00000405271 A0A0A0MQY5 61 aa5.48□□□□□ -1.53
EPCAM-202ENST00000405271 MUC5BQ9HC84 5762 aaPredicted RBP5.48□□□□□ -1.53
EPCAM-202ENST00000405271 MUC5ACP98088 5654 aa5.44□□□□□ -1.54
EPCAM-202ENST00000405271 LCE3EQ5T5B0 92 aa5.42□□□□□ -1.54
EPCAM-202ENST00000405271 AHNAKQ09666 5890 aaKnown RBP5.42□□□□□ -1.54
EPCAM-202ENST00000405271 LCE1EQ5T753 118 aa5.39□□□□□ -1.55
EPCAM-202ENST00000405271 INE1O15225 51 aa5.25□□□□□ -1.57
EPCAM-202ENST00000405271 LCE1CQ5T751 118 aa5□□□□□ -1.61
EPCAM-202ENST00000405271 LCE1BQ5T7P3 118 aa5□□□□□ -1.61
EPCAM-202ENST00000405271 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.67□□□□□ -1.66
EPCAM-202ENST00000405271 PRM1P04553 51 aa4.54□□□□□ -1.68
EPCAM-202ENST00000405271 KRTAP5-11Q6L8G4 156 aa4.47□□□□□ -1.69
EPCAM-202ENST00000405271 KRTAP21-2Q3LI59 83 aa4.33□□□□□ -1.72
EPCAM-202ENST00000405271 LCE1FQ5T754 118 aa4.29□□□□□ -1.72
EPCAM-202ENST00000405271 PHGR1C9JFL3 82 aa3.84□□□□□ -1.8
EPCAM-202ENST00000405271 KRTAP4-4Q9BYR3 166 aa3.81□□□□□ -1.8
EPCAM-202ENST00000405271 MUC19Q7Z5P9 8384 aa3.61□□□□□ -1.83
EPCAM-202ENST00000405271 KRTAP21-1Q3LI58 79 aa2.86□□□□□ -1.95
EPCAM-202ENST00000405271 MUC16Q8WXI7 14507 aa2.55□□□□□ -2
Retrieved 77 of 20,778 RNA–protein pairs in 5.8 ms