RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 KRTAP10-12P60413 245 aa1.46□□□□□ -2.18
RTN4-208ENST00000404909 KRTAP9-7A8MTY7 169 aa1.45□□□□□ -2.18
RTN4-208ENST00000404909 LCE3AQ5TA76 89 aa1.45□□□□□ -2.18
RTN4-208ENST00000404909 SPRR5A0A1B0GTR4 108 aa1.45□□□□□ -2.18
RTN4-208ENST00000404909 PP632Q6XCG6 107 aa1.43□□□□□ -2.18
RTN4-208ENST00000404909 MACF1Q9UPN3 7388 aaKnown RBP1.43□□□□□ -2.18
RTN4-208ENST00000404909 HMCN1Q96RW7 5635 aa1.42□□□□□ -2.18
RTN4-208ENST00000404909 SYNE2Q8WXH0 6885 aaKnown RBP1.42□□□□□ -2.18
RTN4-208ENST00000404909 KRTAP23-1A1A580 65 aa1.42□□□□□ -2.18
RTN4-208ENST00000404909 LUZP6Q538Z0 58 aa1.41□□□□□ -2.18
RTN4-208ENST00000404909 KRTAP8-1Q8IUC2 63 aa1.4□□□□□ -2.19
RTN4-208ENST00000404909 KRTAP19-5Q3LI72 72 aa1.4□□□□□ -2.19
RTN4-208ENST00000404909 KRTAP12-3P60328 96 aa1.39□□□□□ -2.19
RTN4-208ENST00000404909 MUC12Q9UKN1 5478 aa1.39□□□□□ -2.19
RTN4-208ENST00000404909 OBSCNQ5VST9 7968 aa1.37□□□□□ -2.19
RTN4-208ENST00000404909 KRTAP19-7Q3SYF9 63 aa1.37□□□□□ -2.19
RTN4-208ENST00000404909 SPRR2FQ96RM1 72 aa1.36□□□□□ -2.19
RTN4-208ENST00000404909 MDN1Q9NU22 5596 aa1.36□□□□□ -2.19
RTN4-208ENST00000404909 NDUFAF8A1L188 74 aa1.34□□□□□ -2.19
RTN4-208ENST00000404909 MT1EP04732 61 aa1.34□□□□□ -2.19
RTN4-208ENST00000404909 MT1LQ93083 61 aa1.32□□□□□ -2.2
RTN4-208ENST00000404909 KRTAP5-9P26371 169 aa1.31□□□□□ -2.2
RTN4-208ENST00000404909 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.31□□□□□ -2.2
RTN4-208ENST00000404909 INE1O15225 51 aa1.31□□□□□ -2.2
RTN4-208ENST00000404909 KRTAP6-3Q3LI67 103 aa1.3□□□□□ -2.2
RTN4-208ENST00000404909 KRTAP19-3Q7Z4W3 81 aa1.3□□□□□ -2.2
RTN4-208ENST00000404909 SPRR2EP22531 72 aa1.3□□□□□ -2.2
RTN4-208ENST00000404909 SPRR2BP35325 72 aa1.3□□□□□ -2.2
RTN4-208ENST00000404909 SPRR2AP35326 72 aa1.3□□□□□ -2.2
RTN4-208ENST00000404909 LCE3CQ5T5A8 94 aa1.29□□□□□ -2.2
RTN4-208ENST00000404909 DSTQ03001 7570 aaKnown RBP1.29□□□□□ -2.2
RTN4-208ENST00000404909 MT1GP13640 62 aa1.28□□□□□ -2.2
RTN4-208ENST00000404909 LCE1AQ5T7P2 110 aa1.28□□□□□ -2.2
RTN4-208ENST00000404909 MT1MQ8N339 61 aa1.27□□□□□ -2.21
RTN4-208ENST00000404909 KRTAP4-3Q9BYR4 195 aa1.27□□□□□ -2.21
RTN4-208ENST00000404909 SPRR2DP22532 72 aa1.25□□□□□ -2.21
RTN4-208ENST00000404909 NEBP20929 6669 aa1.25□□□□□ -2.21
RTN4-208ENST00000404909 KRTAP9-6A8MVA2 160 aa1.23□□□□□ -2.21
RTN4-208ENST00000404909 KRTAP20-1Q3LI63 56 aa1.21□□□□□ -2.22
RTN4-208ENST00000404909 MUC5BQ9HC84 5762 aaPredicted RBP1.19□□□□□ -2.22
RTN4-208ENST00000404909 KRTAP2-2Q9BYT5 123 aa1.19□□□□□ -2.22
RTN4-208ENST00000404909 KRTAP5-2Q701N4 177 aa1.16□□□□□ -2.22
RTN4-208ENST00000404909 KRTAP2-3P0C7H8 128 aa1.15□□□□□ -2.23
RTN4-208ENST00000404909 KRTAP2-4Q9BYR9 128 aa1.15□□□□□ -2.23
RTN4-208ENST00000404909 KRTAP12-4P60329 112 aa1.14□□□□□ -2.23
RTN4-208ENST00000404909 KRTAP5-5Q701N2 237 aaPredicted RBP1.13□□□□□ -2.23
RTN4-208ENST00000404909 SYNE1Q8NF91 8797 aaKnown RBP1.13□□□□□ -2.23
RTN4-208ENST00000404909 KRTAP2-1Q9BYU5 128 aa1.13□□□□□ -2.23
RTN4-208ENST00000404909 KRTAP6-1Q3LI64 71 aa1.12□□□□□ -2.23
RTN4-208ENST00000404909 MT4P47944 62 aa1.11□□□□□ -2.23
RTN4-208ENST00000404909 MT1AP04731 61 aa1.11□□□□□ -2.23
RTN4-208ENST00000404909 KRTAP5-4Q6L8H1 288 aa1.08□□□□□ -2.24
RTN4-208ENST00000404909 GPR98Q8WXG9 6306 aa1.08□□□□□ -2.24
RTN4-208ENST00000404909 KRTAP5-8O75690 187 aa1.04□□□□□ -2.24
RTN4-208ENST00000404909 KRTAP6-2Q3LI66 62 aa1.04□□□□□ -2.24
RTN4-208ENST00000404909 KRTAP20-2Q3LI61 65 aa1.03□□□□□ -2.24
RTN4-208ENST00000404909 MT3P25713 68 aa1.02□□□□□ -2.25
RTN4-208ENST00000404909 KRTAP5-11Q6L8G4 156 aa1.02□□□□□ -2.25
RTN4-208ENST00000404909 LCE3DQ9BYE3 92 aa0.97□□□□□ -2.25
RTN4-208ENST00000404909 LCE1EQ5T753 118 aa0.96□□□□□ -2.26
RTN4-208ENST00000404909 KRTAP5-1Q6L8H4 278 aa0.96□□□□□ -2.26
RTN4-208ENST00000404909 AHNAK2Q8IVF2 5795 aa0.95□□□□□ -2.26
RTN4-208ENST00000404909 LCE3EQ5T5B0 92 aa0.94□□□□□ -2.26
RTN4-208ENST00000404909 LCE1BQ5T7P3 118 aa0.94□□□□□ -2.26
RTN4-208ENST00000404909 KRTAP4-4Q9BYR3 166 aa0.91□□□□□ -2.26
RTN4-208ENST00000404909 KRTAP5-10Q6L8G5 202 aa0.87□□□□□ -2.27
RTN4-208ENST00000404909 MUC5ACP98088 5654 aa0.87□□□□□ -2.27
RTN4-208ENST00000404909 LCE1FQ5T754 118 aa0.83□□□□□ -2.28
RTN4-208ENST00000404909 PRM1P04553 51 aa0.82□□□□□ -2.28
RTN4-208ENST00000404909 LCE1CQ5T751 118 aa0.82□□□□□ -2.28
RTN4-208ENST00000404909 KRTAP5-7Q6L8G8 165 aa0.81□□□□□ -2.28
RTN4-208ENST00000404909 MUC19Q7Z5P9 8384 aa0.76□□□□□ -2.29
RTN4-208ENST00000404909 AHNAKQ09666 5890 aaKnown RBP0.76□□□□□ -2.29
RTN4-208ENST00000404909 KRTAP21-2Q3LI59 83 aa0.72□□□□□ -2.29
RTN4-208ENST00000404909 KRTAP21-1Q3LI58 79 aa0.68□□□□□ -2.3
RTN4-208ENST00000404909 PHGR1C9JFL3 82 aa0.62□□□□□ -2.31
RTN4-208ENST00000404909 MUC16Q8WXI7 14507 aa0.41□□□□□ -2.34
Retrieved 77 of 20,778 RNA–protein pairs in 12.8 ms